Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1995 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTTGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGGCTTGTATCACTGGCACAAAGTGTTTGGATGTCCTTCACCAGATTCAAGGCAATGGGTGTGAGTGA 528 45.83 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYLACITGTKCLDVLHQIQGNGCE 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32898602 32905802 + CcPI632755_02g019950.1 Cco02g1995 172752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1995 175 FunFam Polyubiquitin 3 1 76 - -
Cco02g1995 175 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cco02g1995 175 SUPERFAMILY Ubiquitin-like 79 152 IPR029071 -
Cco02g1995 175 Gene3D - 1 77 - -
Cco02g1995 175 Gene3D - 78 157 - -
Cco02g1995 175 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cco02g1995 175 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cco02g1995 175 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cco02g1995 175 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cco02g1995 175 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cco02g1995 175 Pfam Ubiquitin family 79 149 IPR000626 GO:0005515(InterPro)
Cco02g1995 175 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cco02g1995 175 CDD Ubl_ubiquitin 1 76 - -
Cco02g1995 175 FunFam NEDD8 protein 77 154 - -
Cco02g1995 175 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cco02g1995 175 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cco02g1995 175 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cco02g1995 175 CDD Ubl_NEDD8 79 152 IPR038738 -
Cco02g1995 175 PANTHER UBIQUITIN 1 76 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Cco02g1995 175 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0181 Cco-Chr2:1759999 Cco02g1995 Cco-Chr2:32898602 1.20E-10 dispersed
Cco02g1995 Cco-Chr2:32898602 Cco10g0537 Cco-Chr10:6404602 6.70E-65 dispersed
Cco02g1995 Cco-Chr2:32898602 Cco03g0488 Cco-Chr3:5122254 3.90E-65 transposed
Cco02g1995 Cco-Chr2:32898602 Cco04g2000 Cco-Chr4:34158677 3.90E-65 transposed
Cco02g1995 Cco-Chr2:32898602 Cco05g1676 Cco-Chr5:23796631 3.90E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1995 K12158 - csv:101214716 293.893