Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2000 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCATCGAAAGAAGCATAAACCTTCTGGAAACCCCACCGCTGCTCCTGTTTCCACCGTCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCCATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGTGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTAATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTATTGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1503 43.78 MDQEVLVDESFPLFSKSHRKKHKPSGNPTAAPVSTVVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQVVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLLKKRNKRRRKEKTSQIIGS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32960115 32963764 - CcPI632755_02g020000.1 Cco02g2000 172757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2000 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cco02g2000 500 CDD DEADc_DDX49 64 266 - -
Cco02g2000 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cco02g2000 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Cco02g2000 500 Gene3D - 273 498 IPR027417 -
Cco02g2000 500 Pfam DEAD/DEAH box helicase 86 253 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco02g2000 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cco02g2000 500 SMART ultradead3 81 280 IPR014001 -
Cco02g2000 500 MobiDBLite consensus disorder prediction 476 500 - -
Cco02g2000 500 Gene3D - 33 266 IPR027417 -
Cco02g2000 500 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 24 491 IPR050079 -
Cco02g2000 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 418 IPR027417 -
Cco02g2000 500 SMART helicmild6 319 400 IPR001650 -
Cco02g2000 500 Pfam Helicase conserved C-terminal domain 301 400 IPR001650 -
Cco02g2000 500 CDD SF2_C_DEAD 277 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0071 Cco-Chr1:528077 Cco02g2000 Cco-Chr2:32960115 1.70E-96 dispersed
Cco02g2000 Cco-Chr2:32960115 Cco09g1056 Cco-Chr9:10077002 1.90E-64 dispersed
Cco02g2000 Cco-Chr2:32960115 Cco09g0073 Cco-Chr9:627065 1.50E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2000 K14778 - csv:101215196 873.618