Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2000 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCATCGAAAGAAGCATAAACCTTCTGGAAACCCCACCGCTGCTCCTGTTTCCACCGTCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCCATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGTGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTAATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTATTGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1503 43.78 MDQEVLVDESFPLFSKSHRKKHKPSGNPTAAPVSTVVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQVVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLLKKRNKRRRKEKTSQIIGS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32960115 32963764 - CcPI632755_02g020000.1 Cco02g2000 172757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2000 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cco02g2000 500 CDD DEADc_DDX49 64 266 - -
Cco02g2000 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cco02g2000 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Cco02g2000 500 Gene3D - 273 498 IPR027417 -
Cco02g2000 500 Pfam DEAD/DEAH box helicase 86 253 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco02g2000 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cco02g2000 500 SMART ultradead3 81 280 IPR014001 -
Cco02g2000 500 MobiDBLite consensus disorder prediction 476 500 - -
Cco02g2000 500 Gene3D - 33 266 IPR027417 -
Cco02g2000 500 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 24 491 IPR050079 -
Cco02g2000 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 418 IPR027417 -
Cco02g2000 500 SMART helicmild6 319 400 IPR001650 -
Cco02g2000 500 Pfam Helicase conserved C-terminal domain 301 400 IPR001650 -
Cco02g2000 500 CDD SF2_C_DEAD 277 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2000 K14778 - - csv:101215196 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0071 Cco-Chr1:528077 Cco02g2000 Cco-Chr2:32960115 1.70E-96 dispersed
Cco02g2000 Cco-Chr2:32960115 Cco09g1056 Cco-Chr9:10077002 1.90E-64 dispersed
Cco02g2000 Cco-Chr2:32960115 Cco09g0073 Cco-Chr9:627065 1.50E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1140 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01825 Cam02g1933 Cec02g1959 Cco02g2000 Clacu02g1914 Cmu02g1862 Cre02g2177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009084 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34