Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2003 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTTGGGAGCTCTTTCAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCTGCCCATCAAAGCTACGGCCACGGAGGGGCCTCCGACGATCCAAAAAACTCCGATCGGTGGAAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGCTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTTCCACAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCCTTCAACTAAATGTTGGTCTTGTCATCGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCCCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAACTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCCGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTTGAAAGCAGATCACTAGCAGTTATAGCTTCAACACTAGATTCCCTATTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAAAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTTGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2478 44.11 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSFKLQSGVFGTTISSGASSLQLRSSKVRTVLPIKATATEGPPTIQKTPIGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRAAAQNIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLVTWYDNEWGYSLQLNVGLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPPWRLNMDEFRLPTANTRSHHGIVYYWNSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDKVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32986294 32995039 + CcPI632755_02g020030.1 Cco02g2003 172760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2003 825 Pfam Cation efflux family 540 730 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2003 825 Gene3D - 91 411 - -
Cco02g2003 825 NCBIfam cation diffusion facilitator family transporter 535 811 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2003 825 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Cco02g2003 825 Pfam Dimerisation domain of Zinc Transporter 741 811 IPR027470 -
Cco02g2003 825 FunFam Metal tolerance protein 11 537 730 - -
Cco02g2003 825 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287(InterPro)
Cco02g2003 825 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 91 411 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cco02g2003 825 SUPERFAMILY Cation efflux protein transmembrane domain-like 534 732 IPR027469 -
Cco02g2003 825 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Cco02g2003 825 FunFam Glyceraldehyde-3-phosphate dehydrogenase 238 403 - -
Cco02g2003 825 Gene3D Cation efflux protein transmembrane domain 534 730 IPR027469 -
Cco02g2003 825 Gene3D Dihydrodipicolinate Reductase; domain 2 237 403 - -
Cco02g2003 825 Gene3D Cation efflux protein, cytoplasmic domain 737 812 IPR036837 -
Cco02g2003 825 FunFam Metal tolerance protein 11 733 813 - -
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 248 - -
Cco02g2003 825 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620(InterPro)
Cco02g2003 825 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Cco02g2003 825 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 87 409 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 735 811 IPR036837 -
Cco02g2003 825 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2003 K00134 - - csv:101216157 755.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1454 Cco-Chr2:26946870 Cco02g2003 Cco-Chr2:32986294 3.70E-119 transposed
Cco03g0358 Cco-Chr3:3886926 Cco02g2003 Cco-Chr2:32986294 1.20E-137 transposed
Cco03g1449 Cco-Chr3:28907223 Cco02g2003 Cco-Chr2:32986294 1.80E-95 transposed
Cco05g1429 Cco-Chr5:16057727 Cco02g2003 Cco-Chr2:32986294 1.10E-83 transposed
Cco11g0696 Cco-Chr11:7638166 Cco02g2003 Cco-Chr2:32986294 3.90E-138 transposed
Cco11g1940 Cco-Chr11:32026405 Cco02g2003 Cco-Chr2:32986294 1.60E-86 transposed
Cco02g2003 Cco-Chr2:32986294 Cco09g2477 Cco-Chr9:38935019 1.10E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40