Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2003 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTTGGGAGCTCTTTCAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCTGCCCATCAAAGCTACGGCCACGGAGGGGCCTCCGACGATCCAAAAAACTCCGATCGGTGGAAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGCTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTTCCACAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCCTTCAACTAAATGTTGGTCTTGTCATCGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCCCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAACTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCCGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTTGAAAGCAGATCACTAGCAGTTATAGCTTCAACACTAGATTCCCTATTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAAAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTTGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2478 44.11 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSFKLQSGVFGTTISSGASSLQLRSSKVRTVLPIKATATEGPPTIQKTPIGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRAAAQNIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLVTWYDNEWGYSLQLNVGLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPPWRLNMDEFRLPTANTRSHHGIVYYWNSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDKVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32986294 32995039 + CcPI632755_02g020030.1 Cco02g2003 172760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2003 825 Pfam Cation efflux family 540 730 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2003 825 Gene3D - 91 411 - -
Cco02g2003 825 NCBIfam cation diffusion facilitator family transporter 535 811 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2003 825 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Cco02g2003 825 Pfam Dimerisation domain of Zinc Transporter 741 811 IPR027470 -
Cco02g2003 825 FunFam Metal tolerance protein 11 537 730 - -
Cco02g2003 825 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287(InterPro)
Cco02g2003 825 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 91 411 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cco02g2003 825 SUPERFAMILY Cation efflux protein transmembrane domain-like 534 732 IPR027469 -
Cco02g2003 825 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Cco02g2003 825 FunFam Glyceraldehyde-3-phosphate dehydrogenase 238 403 - -
Cco02g2003 825 Gene3D Cation efflux protein transmembrane domain 534 730 IPR027469 -
Cco02g2003 825 Gene3D Dihydrodipicolinate Reductase; domain 2 237 403 - -
Cco02g2003 825 Gene3D Cation efflux protein, cytoplasmic domain 737 812 IPR036837 -
Cco02g2003 825 FunFam Metal tolerance protein 11 733 813 - -
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 248 - -
Cco02g2003 825 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620(InterPro)
Cco02g2003 825 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Cco02g2003 825 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 87 409 IPR020831 GO:0016620(InterPro)
Cco02g2003 825 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 735 811 IPR036837 -
Cco02g2003 825 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1454 Cco-Chr2:26946870 Cco02g2003 Cco-Chr2:32986294 3.70E-119 transposed
Cco03g0358 Cco-Chr3:3886926 Cco02g2003 Cco-Chr2:32986294 1.20E-137 transposed
Cco03g1449 Cco-Chr3:28907223 Cco02g2003 Cco-Chr2:32986294 1.80E-95 transposed
Cco05g1429 Cco-Chr5:16057727 Cco02g2003 Cco-Chr2:32986294 1.10E-83 transposed
Cco11g0696 Cco-Chr11:7638166 Cco02g2003 Cco-Chr2:32986294 3.90E-138 transposed
Cco11g1940 Cco-Chr11:32026405 Cco02g2003 Cco-Chr2:32986294 1.60E-86 transposed
Cco02g2003 Cco-Chr2:32986294 Cco09g2477 Cco-Chr9:38935019 1.10E-186 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2003 K00134 - csv:101216157 755.747