Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2005 ATGCAGCACCTTCAATCTCGCCTACTAAAGTCTCTTTCCATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTTCTGCTTCCCCCAAAGGTTTGGCTAAGGTTGTGCTGAAAAAGGGGAAGGCACAGCTTTTTAAAGATGGGAGTCCAATGGTGTACAGTGGAGCTGTTGATAGAATTATTGGGAGGCCACCACCAAAAACTGGAGATGTTGTTCTGGTAGCCGATGGGACTGAAAAACCTATAGGTTGGGGTTTGTATAATTCAGTTTCTATGTTCTCTGTCAGATTGATGCAGTTGGAAGAAGAGGCAGCTAGAGACTCTTCTTGCACATTGAATATGGAGAAGATGATTGGAACAAGGATACATACTGCTAGAGAACTACGAAAGAACTTGGGACTTCCGTCGACCAGTACGAATGCTTATCGTCTTGTTAATAGTGAAGGAGATAGATTGTCAGGACTAATCATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCAGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGATTGTGTCCATGGAATCGACGAAATCAATCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGGATAGATGTGTCTGAATTGAAGGATACAAATCCGTCCATTTGTCCTGAAAGAACAAAGGTGACGGAGAATGAAATTTTTTATGCCATTTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAGGTTCTTGATCTCTGCTGCTACAGTGGTGGGTTTTCTCTAAATGCAATACGTGGTGGAGCTATTAATGTCACGGGTATTGATTCATCATTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTGATCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCAGATGCCACTGCATTCATGAAGGATGCTCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCCAAACTAGCGCCACGGAAAAAGGTTCTGCAAACTGCATCAGGAATGTACAGGACTTTAAATTCATTAGCAATGCAACTCACAAGGAAAGGTGGTCTTCTCATGACTTGTTCGTGTTCTGGAGCAATGACTCAAAGTGGGATGTTCTTACAAATACTCCAGGGTGCAGCATCAATGGCCAAAAAGAAAATCACAGTTCTACGACAAGCAGGAGCGGCATGTGATCACCCGATCGACCCTACTTACCCAGAGGGTGCTTATCTTTCTAACATTCTTCTACGTGTGCTCTAA 1320 42.88 MQHLQSRLLKSLSISSSPAASTIQEIASASPKGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAARDSSCTLNMEKMIGTRIHTARELRKNLGLPSTSTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVHGIDEINHVKWRPSVDILKEEGIDVSELKDTNPSICPERTKVTENEIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNAIRGGAINVTGIDSSLPALELAKENVILNSMDPERISFLKADATAFMKDALSRNESWDIVILDPPKLAPRKKVLQTASGMYRTLNSLAMQLTRKGGLLMTCSCSGAMTQSGMFLQILQGAASMAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33000390 33004411 + CcPI632755_02g020050.1 Cco02g2005 172762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2005 439 Pfam S-adenosylmethionine-dependent methyltransferase 224 394 IPR019614 GO:0008168(InterPro)
Cco02g2005 439 Gene3D PUA domain 34 105 IPR036974 GO:0003723(InterPro)
Cco02g2005 439 Pfam PUA-like domain 37 100 IPR041532 GO:0003723(InterPro)
Cco02g2005 439 CDD RlmI_M_like 123 213 - -
Cco02g2005 439 CDD AdoMet_MTases 265 380 - -
Cco02g2005 439 Gene3D RNA methyltransferase domain (HRMD) like 116 219 - -
Cco02g2005 439 CDD PUA_RlmI 35 105 IPR041532 GO:0003723(InterPro)
Cco02g2005 439 SMART pua_5 35 115 IPR002478 GO:0003723(InterPro)
Cco02g2005 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 434 IPR029063 -
Cco02g2005 439 Gene3D Vaccinia Virus protein VP39 226 439 IPR029063 -
Cco02g2005 439 ProSiteProfiles PUA domain profile. 34 90 - -
Cco02g2005 439 SUPERFAMILY PUA domain-like 36 104 IPR015947 -
Cco02g2005 439 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 13 438 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2005 - - - 0.0