Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2006 ATGAGTTCGAACACCGCGTCTAGCTCCGGAGGTCCGGGATCGAACGATTCATCATCAAATAGAAGGAATTCGAAGCGACCTAAATATTCGAGGTTTACCCAGCAGGAACTTCCAGCATGTAAACCCATTCTCACACCAAGATGGGTGATTTCTGCATTCATGTTAGTTAGCATTATCTTTGTTCCCATTGGAGTTGCTTCCTTGTTTGCTTCCAGAGATGTCGTTGAAATAATCGATCGTTATGAAACTGAGTGCATACCAGAACAATTTAGAAACGATAAGGTTGGGTTCATACAGGGCCCTGCAGTTAAAACTTGCCGCAGAAACATAACTGTGCCGAAACGTATGAAACAACCAATATATGTTTATTACCAGCTTGACAATTTCTACCAGAACCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATGCTGGCAGCGCGCATGATACAAGCTCTTGCAAGCCTGAAGACAATGTGAATGGGCAGCCAATCGTTCCCTGTGGTTTGATAGCATGGAGTTTGTTTAATGATACTTATAACTTCACCCTTAACAAGAAGCAAGTCGATGTGAATAAGGTTGGTATTTCATGGAAGAGTGACCGGGAACATAAATTTGGCAAGAATGTATTTCCCAAGAACTTTCAAAATGGTACACTAAAAGGAGGCAAAACCCTTGATGCAGACAAACCATTGAGTCAACAGGAGGACCTTATTGTGTGGATGCGAACTGCTGCTCTTCCCACATTCAGAAAGTTATATGGAAAGATAGAGGTCGACCTTGAGAAAAATGATGTAATAGATGTGGTTTTGGAGAACAATTATAACACTTACAGTTTTAACGGCAAGAAAAAGCTTGTGCTTTCTACAACTAGCTGGCTTGGTGGGAAGAATGATTTTCTTGGAATTGCTTATCTTACTGTTGGTGGGTTATGCTTCTTTTTGGCAATGGCTTTCACAGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCGTCATATCTGTCATGGAATAGAAACCCAGGTGGGCACTGA 1047 42.41 MSSNTASSSGGPGSNDSSSNRRNSKRPKYSRFTQQELPACKPILTPRWVISAFMLVSIIFVPIGVASLFASRDVVEIIDRYETECIPEQFRNDKVGFIQGPAVKTCRRNITVPKRMKQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDAGSAHDTSSCKPEDNVNGQPIVPCGLIAWSLFNDTYNFTLNKKQVDVNKVGISWKSDREHKFGKNVFPKNFQNGTLKGGKTLDADKPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEKNDVIDVVLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLAMAFTVVYLVKPRRLGDPSYLSWNRNPGGH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33004690 33007311 - CcPI632755_02g020060.1 Cco02g2006 172763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2006 348 PIRSF Lem3/Cdc50 1 344 IPR005045 GO:0016020(InterPro)
Cco02g2006 348 MobiDBLite consensus disorder prediction 1 31 - -
Cco02g2006 348 MobiDBLite consensus disorder prediction 141 161 - -
Cco02g2006 348 PANTHER CELL CYCLE CONTROL PROTEIN 50 17 340 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Cco02g2006 348 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g2006 348 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 68 332 IPR005045 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2006 Cco-Chr2:33004690 Cco05g1219 Cco-Chr5:11457658 2.10E-126 dispersed
Cco02g2006 Cco-Chr2:33004690 Cco04g2262 Cco-Chr4:36152810 4.40E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2006 K26935 - csv:101216400 639.032