Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2006 ATGAGTTCGAACACCGCGTCTAGCTCCGGAGGTCCGGGATCGAACGATTCATCATCAAATAGAAGGAATTCGAAGCGACCTAAATATTCGAGGTTTACCCAGCAGGAACTTCCAGCATGTAAACCCATTCTCACACCAAGATGGGTGATTTCTGCATTCATGTTAGTTAGCATTATCTTTGTTCCCATTGGAGTTGCTTCCTTGTTTGCTTCCAGAGATGTCGTTGAAATAATCGATCGTTATGAAACTGAGTGCATACCAGAACAATTTAGAAACGATAAGGTTGGGTTCATACAGGGCCCTGCAGTTAAAACTTGCCGCAGAAACATAACTGTGCCGAAACGTATGAAACAACCAATATATGTTTATTACCAGCTTGACAATTTCTACCAGAACCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATGCTGGCAGCGCGCATGATACAAGCTCTTGCAAGCCTGAAGACAATGTGAATGGGCAGCCAATCGTTCCCTGTGGTTTGATAGCATGGAGTTTGTTTAATGATACTTATAACTTCACCCTTAACAAGAAGCAAGTCGATGTGAATAAGGTTGGTATTTCATGGAAGAGTGACCGGGAACATAAATTTGGCAAGAATGTATTTCCCAAGAACTTTCAAAATGGTACACTAAAAGGAGGCAAAACCCTTGATGCAGACAAACCATTGAGTCAACAGGAGGACCTTATTGTGTGGATGCGAACTGCTGCTCTTCCCACATTCAGAAAGTTATATGGAAAGATAGAGGTCGACCTTGAGAAAAATGATGTAATAGATGTGGTTTTGGAGAACAATTATAACACTTACAGTTTTAACGGCAAGAAAAAGCTTGTGCTTTCTACAACTAGCTGGCTTGGTGGGAAGAATGATTTTCTTGGAATTGCTTATCTTACTGTTGGTGGGTTATGCTTCTTTTTGGCAATGGCTTTCACAGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCGTCATATCTGTCATGGAATAGAAACCCAGGTGGGCACTGA 1047 42.41 MSSNTASSSGGPGSNDSSSNRRNSKRPKYSRFTQQELPACKPILTPRWVISAFMLVSIIFVPIGVASLFASRDVVEIIDRYETECIPEQFRNDKVGFIQGPAVKTCRRNITVPKRMKQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDAGSAHDTSSCKPEDNVNGQPIVPCGLIAWSLFNDTYNFTLNKKQVDVNKVGISWKSDREHKFGKNVFPKNFQNGTLKGGKTLDADKPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEKNDVIDVVLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLAMAFTVVYLVKPRRLGDPSYLSWNRNPGGH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33004690 33007311 - CcPI632755_02g020060.1 Cco02g2006 172763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2006 348 PIRSF Lem3/Cdc50 1 344 IPR005045 GO:0016020(InterPro)
Cco02g2006 348 MobiDBLite consensus disorder prediction 1 31 - -
Cco02g2006 348 MobiDBLite consensus disorder prediction 141 161 - -
Cco02g2006 348 PANTHER CELL CYCLE CONTROL PROTEIN 50 17 340 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Cco02g2006 348 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g2006 348 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 68 332 IPR005045 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2006 K26935 - - csv:101216400 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2006 Cco-Chr2:33004690 Cco05g1219 Cco-Chr5:11457658 2.10E-126 dispersed
Cco02g2006 Cco-Chr2:33004690 Cco04g2262 Cco-Chr4:36152810 4.40E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1167 . . . . . . . . . . . . . . . . Cpe16g00705 . . . . . . . Cla02g01831 Cam02g1940 Cec02g1967 Cco02g2006 Clacu02g1920 Cmu02g1869 Cre02g2182 . . . . . . . Cme11g01638 . . . . . . . Bma12g00575 Sed01g0768 . . . . . . . Cpe05g01030 Bhi10g00930 Tan05g0580 Cmetu11g1042 . Hepe08g0651 . . . . . . . . . . Csa06g01147 Chy11g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000647 4 6 4 4 3 3 5 2 2 3 3 2 5 3 3 3 2 5 5 2 3 3 3 2 3 3 3 7 4 2 102