Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2007 ATGACTATGACGGTCGCTGCAAGAGCAATCGCAGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCCGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATAGCCGATCGTCGAATTTTGGTCTTGAAGCAGATATTTGGAATATTTATACCTCGTACGCAAGCATTAGTATGCAGGTCTGCTATGAGCTTAAGTGCACAAGATGCTAAGCGACCAGGCAATGGATTTATGTTATCCTATCTCGTGGTTCCTCAATATGTTGCTGTGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCGACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTACCATGATGCATCAATATCTACTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCGCAACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAAACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCTTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTGAAGATGCCACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCTTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCATTGA 1965 44.38 MTMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTIADRRILVLKQIFGIFIPRTQALVCRSAMSLSAQDAKRPGNGFMLSYLVVPQYVAVPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTYHDASISTCKCILPRDVGLFNRNSFLQLQQSSEIVDKLVFVPIEFLFKKVLTDVYFSSEGCFFCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLEDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33017619 33028447 + CcPI632755_02g020070.1 Cco02g2007 172764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2007 654 SUPERFAMILY ALDH-like 241 650 IPR016161 GO:0016491(InterPro)
Cco02g2007 654 FunFam Succinate-semialdehyde dehydrogenase, mitochondrial 56 224 - -
Cco02g2007 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 243 357 IPR016162 GO:0016491(InterPro)
Cco02g2007 654 SUPERFAMILY ALDH-like 44 202 IPR016161 GO:0016491(InterPro)
Cco02g2007 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 206 IPR016162 GO:0016491(InterPro)
Cco02g2007 654 FunFam Aldehyde dehydrogenase, putative 618 644 - -
Cco02g2007 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 358 377 IPR016163 GO:0016620(InterPro)
Cco02g2007 654 Pfam Aldehyde dehydrogenase family 242 377 IPR015590 GO:0016491(InterPro)
Cco02g2007 654 Pfam Aldehyde dehydrogenase family 74 203 IPR015590 GO:0016491(InterPro)
Cco02g2007 654 Pfam Aldehyde dehydrogenase family 450 646 IPR015590 GO:0016491(InterPro)
Cco02g2007 654 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 243 651 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Cco02g2007 654 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 354 361 IPR029510 GO:0016491(InterPro)
Cco02g2007 654 FunFam Succinate-semialdehyde dehydrogenase, mitochondrial 237 392 - -
Cco02g2007 654 CDD ALDH_F5_SSADH_GabD 85 648 - -
Cco02g2007 654 FunFam Succinate-semialdehyde dehydrogenase I 437 615 - -
Cco02g2007 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 428 652 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2007 Cco-Chr2:33017619 Cco06g1169 Cco-Chr6:20784425 8.60E-73 dispersed
Cco02g2007 Cco-Chr2:33017619 Cco06g1872 Cco-Chr6:28937996 1.50E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2007 K17761 - csv:101217352 360.147