Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2007 | ATGACTATGACGGTCGCTGCAAGAGCAATCGCAGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCCGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATAGCCGATCGTCGAATTTTGGTCTTGAAGCAGATATTTGGAATATTTATACCTCGTACGCAAGCATTAGTATGCAGGTCTGCTATGAGCTTAAGTGCACAAGATGCTAAGCGACCAGGCAATGGATTTATGTTATCCTATCTCGTGGTTCCTCAATATGTTGCTGTGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCGACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTACCATGATGCATCAATATCTACTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCGCAACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAAACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCTTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTGAAGATGCCACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCTTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCATTGA | 1965 | 44.38 | MTMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTIADRRILVLKQIFGIFIPRTQALVCRSAMSLSAQDAKRPGNGFMLSYLVVPQYVAVPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTYHDASISTCKCILPRDVGLFNRNSFLQLQQSSEIVDKLVFVPIEFLFKKVLTDVYFSSEGCFFCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLEDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33017619 | 33028447 | + | CcPI632755_02g020070.1 | Cco02g2007 | 172764 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2007 | 654 | SUPERFAMILY | ALDH-like | 241 | 650 | IPR016161 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | FunFam | Succinate-semialdehyde dehydrogenase, mitochondrial | 56 | 224 | - | - | |
Cco02g2007 | 654 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 243 | 357 | IPR016162 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | SUPERFAMILY | ALDH-like | 44 | 202 | IPR016161 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 57 | 206 | IPR016162 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | FunFam | Aldehyde dehydrogenase, putative | 618 | 644 | - | - | |
Cco02g2007 | 654 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 358 | 377 | IPR016163 | GO:0016620(InterPro) | |
Cco02g2007 | 654 | Pfam | Aldehyde dehydrogenase family | 242 | 377 | IPR015590 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | Pfam | Aldehyde dehydrogenase family | 74 | 203 | IPR015590 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | Pfam | Aldehyde dehydrogenase family | 450 | 646 | IPR015590 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 243 | 651 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
Cco02g2007 | 654 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 354 | 361 | IPR029510 | GO:0016491(InterPro) | |
Cco02g2007 | 654 | FunFam | Succinate-semialdehyde dehydrogenase, mitochondrial | 237 | 392 | - | - | |
Cco02g2007 | 654 | CDD | ALDH_F5_SSADH_GabD | 85 | 648 | - | - | |
Cco02g2007 | 654 | FunFam | Succinate-semialdehyde dehydrogenase I | 437 | 615 | - | - | |
Cco02g2007 | 654 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 428 | 652 | IPR016163 | GO:0016620(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2007 | Cco-Chr2:33017619 | Cco06g1169 | Cco-Chr6:20784425 | 8.60E-73 | dispersed | |
Cco02g2007 | Cco-Chr2:33017619 | Cco06g1872 | Cco-Chr6:28937996 | 1.50E-69 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2007 | K17761 | - | csv:101217352 | 360.147 |