Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2008 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTTGGAGGCCCCGATAAAGCCACCCCAAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAATAACCTATTTAACTCCGAACAGCCTCCGCCTCCACCACCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCACCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAATAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA | 1092 | 50.92 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33035249 | 33039185 | + | CcPI632755_02g020080.1 | Cco02g2008 | 172765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2008 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cco02g2008 | 363 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Cco02g2008 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 201 | IPR046955 | GO:0003700(InterPro) | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 334 | 363 | - | - | |
Cco02g2008 | 363 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
Cco02g2008 | 363 | Gene3D | - | 32 | 90 | - | - | |
Cco02g2008 | 363 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 318 | 333 | - | - | |
Cco02g2008 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cco02g2008 | 363 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cco02g2008 | 363 | MobiDBLite | consensus disorder prediction | 293 | 363 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2008 | Cco-Chr2:33035249 | Cco04g1886 | Cco-Chr4:33440664 | 6.50E-30 | dispersed | |
Cco05g0383 | Cco-Chr5:3112556 | Cco02g2008 | Cco-Chr2:33035249 | 1.00E-39 | transposed | |
Cco07g0226 | Cco-Chr7:2286328 | Cco02g2008 | Cco-Chr2:33035249 | 2.30E-32 | transposed | |
Cco10g1314 | Cco-Chr10:26074426 | Cco02g2008 | Cco-Chr2:33035249 | 2.70E-34 | transposed | |
Cco11g0984 | Cco-Chr11:16134236 | Cco02g2008 | Cco-Chr2:33035249 | 3.10E-30 | transposed | |
Cco02g2008 | Cco-Chr2:33035249 | Cco09g2488 | Cco-Chr9:39010121 | 1.30E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58823 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2008 | - | - | - | 0.0 |