Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2008 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTTGGAGGCCCCGATAAAGCCACCCCAAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAATAACCTATTTAACTCCGAACAGCCTCCGCCTCCACCACCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCACCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAATAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1092 50.92 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33035249 33039185 + CcPI632755_02g020080.1 Cco02g2008 172765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2008 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 1 26 - -
Cco02g2008 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cco02g2008 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 201 IPR046955 GO:0003700(InterPro)
Cco02g2008 363 MobiDBLite consensus disorder prediction 334 363 - -
Cco02g2008 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 268 287 - -
Cco02g2008 363 Gene3D - 32 90 - -
Cco02g2008 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 318 333 - -
Cco02g2008 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cco02g2008 363 FunFam Myb family transcription factor 32 90 - -
Cco02g2008 363 MobiDBLite consensus disorder prediction 1 17 - -
Cco02g2008 363 MobiDBLite consensus disorder prediction 293 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2008 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2008 Cco-Chr2:33035249 Cco04g1886 Cco-Chr4:33440664 6.50E-30 dispersed
Cco05g0383 Cco-Chr5:3112556 Cco02g2008 Cco-Chr2:33035249 1.00E-39 transposed
Cco07g0226 Cco-Chr7:2286328 Cco02g2008 Cco-Chr2:33035249 2.30E-32 transposed
Cco10g1314 Cco-Chr10:26074426 Cco02g2008 Cco-Chr2:33035249 2.70E-34 transposed
Cco11g0984 Cco-Chr11:16134236 Cco02g2008 Cco-Chr2:33035249 3.10E-30 transposed
Cco02g2008 Cco-Chr2:33035249 Cco09g2488 Cco-Chr9:39010121 1.30E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58823 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cco TF