Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2008 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTTGGAGGCCCCGATAAAGCCACCCCAAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAATAACCTATTTAACTCCGAACAGCCTCCGCCTCCACCACCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCACCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAATAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1092 50.92 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33035249 33039185 + CcPI632755_02g020080.1 Cco02g2008 172765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2008 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 1 26 - -
Cco02g2008 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cco02g2008 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 201 IPR046955 GO:0003700(InterPro)
Cco02g2008 363 MobiDBLite consensus disorder prediction 334 363 - -
Cco02g2008 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 268 287 - -
Cco02g2008 363 Gene3D - 32 90 - -
Cco02g2008 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cco02g2008 363 MobiDBLite consensus disorder prediction 318 333 - -
Cco02g2008 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cco02g2008 363 FunFam Myb family transcription factor 32 90 - -
Cco02g2008 363 MobiDBLite consensus disorder prediction 1 17 - -
Cco02g2008 363 MobiDBLite consensus disorder prediction 293 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2008 Cco-Chr2:33035249 Cco04g1886 Cco-Chr4:33440664 6.50E-30 dispersed
Cco05g0383 Cco-Chr5:3112556 Cco02g2008 Cco-Chr2:33035249 1.00E-39 transposed
Cco07g0226 Cco-Chr7:2286328 Cco02g2008 Cco-Chr2:33035249 2.30E-32 transposed
Cco10g1314 Cco-Chr10:26074426 Cco02g2008 Cco-Chr2:33035249 2.70E-34 transposed
Cco11g0984 Cco-Chr11:16134236 Cco02g2008 Cco-Chr2:33035249 3.10E-30 transposed
Cco02g2008 Cco-Chr2:33035249 Cco09g2488 Cco-Chr9:39010121 1.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58823 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2008 - - - 0.0