Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2012 ATGCTTATGCTTTTTGAATCCAACCCAACTCGTCTGCTAAACGGAGCAACGACGGCGAAAAAATGTGGCAAAAGGGTTGCCGCCGAGAAAGAACCATCGCTTAAGAAGACTGACAACAGTAGCGGTGGTGGCGGCAGCAGCCGTGGAAAGTCCTTGAAGCGGCTGGAGAAAAATATCACCGCAGCCTTGAGAAGAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAGTGGACAGATATGTCGAATCAAATCAATCGCACTTTAAAGTATCATTCAGTAATCGGAGCTTGCACGCCGTTTCCGATTCTCCTAATCCCTACGAAAAGGCTCTGTCGATCATCGGGAAAACCCTGGTCCCTTCGACGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGGTACCCTCCGCCGCCGTCTACGGCCGCAATTTCGCATTTGTTTACGACGACGCACGATCAAATGGTGTTCAGTTTTCACAATGATAATTCCCCGTGCCATGGATTTGAAGAAGTTCTTGATTGCTACAAGAAGATAATTCCGAATGTGCAACTTTCAGGGCCAACTTCTTACGGTCCTGTGGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGTGGACAATTTCATATTCTGCTCATTGTTGCAGATGGACAGAAGGTAAAAGACATTTGTGCCAAGGTTACTCGAAGCTCCAATGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACTACAAGATCCCAGCTCGAGATTTCGACAATTTTCAGTTTGTTAACTTCACTGAAATAACGTCGAAAAGCCACGGCACGCCTAAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTTATGGAGTTCCTTTCCAGTACAAAGCAACATGTGACAGGAAAAACAAAATGCATTGTGCCACGACCCCCTCCAACACGTTATACTCGTCCTACACGGCTCACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATCTGATGAACTGAATCAGTATGGAACTTGTCACTTCCTTTGCTTGATTATTGCTCTTTATAATTCTGGGGTTTCAATATTGGTTCCAAATTTGGGATGGATCAAGTATAGAAACAATAACATTATTTCCAACTCAAATGCAGCCTATCAGAAACCGAATAAGGCTACATACTGGGTGATCGGATTGCACCAAGGGGATAGTGAGATGATGTCGATGATAATCAGACGAATATGA 1338 44.92 MLMLFESNPTRLLNGATTAKKCGKRVAAEKEPSLKKTDNSSGGGGSSRGKSLKRLEKNITAALRREGLESSNLIVGIDFTKSNEWTDMSNQINRTLKYHSVIGACTPFPILLIPTKRLCRSSGKPWSLRRRRLNSLLRFRRRYPPPPSTAAISHLFTTTHDQMVFSFHNDNSPCHGFEEVLDCYKKIIPNVQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQKVKDICAKVTRSSNVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDYKIPARDFDNFQFVNFTEITSKSHGTPKKEAAFALAALMEFLSSTKQHVTGKTKCIVPRPPPTRYTRPTRLTPIPSNTSSASASDELNQYGTCHFLCLIIALYNSGVSILVPNLGWIKYRNNNIISNSNAAYQKPNKATYWVIGLHQGDSEMMSMIIRRI 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33072731 33080552 - CcPI632755_02g020120.1 Cco02g2012 172769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2012 445 PANTHER COPINE FAMILY PROTEIN 1 50 355 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cco02g2012 445 MobiDBLite consensus disorder prediction 23 53 - -
Cco02g2012 445 MobiDBLite consensus disorder prediction 342 365 - -
Cco02g2012 445 Pfam Copine 157 329 IPR010734 -
Cco02g2012 445 SUPERFAMILY vWA-like 159 285 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2012 K16280 - - csv:101218058 353.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2012 Cco-Chr2:33072731 Cco04g1893 Cco-Chr4:33486942 7.20E-63 dispersed
Cco02g2012 Cco-Chr2:33072731 Cco05g2869 Cco-Chr5:36304338 5.00E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55