Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2012 ATGCTTATGCTTTTTGAATCCAACCCAACTCGTCTGCTAAACGGAGCAACGACGGCGAAAAAATGTGGCAAAAGGGTTGCCGCCGAGAAAGAACCATCGCTTAAGAAGACTGACAACAGTAGCGGTGGTGGCGGCAGCAGCCGTGGAAAGTCCTTGAAGCGGCTGGAGAAAAATATCACCGCAGCCTTGAGAAGAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAGTGGACAGATATGTCGAATCAAATCAATCGCACTTTAAAGTATCATTCAGTAATCGGAGCTTGCACGCCGTTTCCGATTCTCCTAATCCCTACGAAAAGGCTCTGTCGATCATCGGGAAAACCCTGGTCCCTTCGACGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGGTACCCTCCGCCGCCGTCTACGGCCGCAATTTCGCATTTGTTTACGACGACGCACGATCAAATGGTGTTCAGTTTTCACAATGATAATTCCCCGTGCCATGGATTTGAAGAAGTTCTTGATTGCTACAAGAAGATAATTCCGAATGTGCAACTTTCAGGGCCAACTTCTTACGGTCCTGTGGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGTGGACAATTTCATATTCTGCTCATTGTTGCAGATGGACAGAAGGTAAAAGACATTTGTGCCAAGGTTACTCGAAGCTCCAATGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACTACAAGATCCCAGCTCGAGATTTCGACAATTTTCAGTTTGTTAACTTCACTGAAATAACGTCGAAAAGCCACGGCACGCCTAAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTTATGGAGTTCCTTTCCAGTACAAAGCAACATGTGACAGGAAAAACAAAATGCATTGTGCCACGACCCCCTCCAACACGTTATACTCGTCCTACACGGCTCACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATCTGATGAACTGAATCAGTATGGAACTTGTCACTTCCTTTGCTTGATTATTGCTCTTTATAATTCTGGGGTTTCAATATTGGTTCCAAATTTGGGATGGATCAAGTATAGAAACAATAACATTATTTCCAACTCAAATGCAGCCTATCAGAAACCGAATAAGGCTACATACTGGGTGATCGGATTGCACCAAGGGGATAGTGAGATGATGTCGATGATAATCAGACGAATATGA 1338 44.92 MLMLFESNPTRLLNGATTAKKCGKRVAAEKEPSLKKTDNSSGGGGSSRGKSLKRLEKNITAALRREGLESSNLIVGIDFTKSNEWTDMSNQINRTLKYHSVIGACTPFPILLIPTKRLCRSSGKPWSLRRRRLNSLLRFRRRYPPPPSTAAISHLFTTTHDQMVFSFHNDNSPCHGFEEVLDCYKKIIPNVQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQKVKDICAKVTRSSNVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDYKIPARDFDNFQFVNFTEITSKSHGTPKKEAAFALAALMEFLSSTKQHVTGKTKCIVPRPPPTRYTRPTRLTPIPSNTSSASASDELNQYGTCHFLCLIIALYNSGVSILVPNLGWIKYRNNNIISNSNAAYQKPNKATYWVIGLHQGDSEMMSMIIRRI 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33072731 33080552 - CcPI632755_02g020120.1 Cco02g2012 172769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2012 445 PANTHER COPINE FAMILY PROTEIN 1 50 355 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cco02g2012 445 MobiDBLite consensus disorder prediction 23 53 - -
Cco02g2012 445 MobiDBLite consensus disorder prediction 342 365 - -
Cco02g2012 445 Pfam Copine 157 329 IPR010734 -
Cco02g2012 445 SUPERFAMILY vWA-like 159 285 IPR036465 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2012 Cco-Chr2:33072731 Cco04g1893 Cco-Chr4:33486942 7.20E-63 dispersed
Cco02g2012 Cco-Chr2:33072731 Cco05g2869 Cco-Chr5:36304338 5.00E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2012 K16280 - csv:101218058 353.984