Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2013 ATGACCCAATCGCCGGTGCCTCCGTCGTTGGCTCCGCCGCAGCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCCGGCTGTCGTGATGTTTTGGTAGTGGCGCCTGGCCACACCGAGTTCTTCTGCCCATCTTGTCAATTACCTCAGATGTTGCCTCCTGAGCTTTTAGTTAGGGCCCACTCCAAGCCCCTTCCTCCTCCTCCGCTACCGCCGCCGCCGCCGTCGCTTCCACCGTCGATGCCCCTTCCCCCTCCTTTGTCCATACACCATGTACCTGCTCATGGCATTGATCCTACCAAGATGCAGCTCCCCTGTGCTAATTGCAAGGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCGCTGTCGATGTCTCCAAGCTCCATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAGGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGGGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACAGAATATCACCCTCCCAAGCTATCCATAGGACCACCTCACCCGGACCCAGTTGTGGAAACATCCTCCTTATCTGCTGTCCAGCCTCCTGAACCTACTTATGATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTACAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCATCTCCCAAATGAGACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACCATTGCAGGTTTATTGTGGGAAAATTGGCACCATGGGAGGAGGAAAGCATTGTGGATTTCGGTTGGCTCAGATTTGAAGTATGATGCTAGGAGAGACTTAGATGATGTAGGTGCAACGTGCATTAAAGTGCATGCTTTGAACAAGCTACCTTATTCAAAGCTTGACTCGAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACATATAGCAGCCTCATAGCATCCTCCGAACGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGGATTTGATGGTCTCATCATATTTGATGAGTGCCATAAAGCCAAAAATTTGGTACCAGAAGCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCAGGGATTTTTTAGGTGCATTGGAGCGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGAGATCGTGGAAGCACCACTAGAAGCTGAGATGATGGAAATGTATACATTAGCAGCTGAATTTTGGGCGAAGTTGCGGGTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAACCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTGAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCTTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTGCCTGAAAAGCCTGAAACTCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCATATCACTAAATGGGAGGGTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCCGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAAAGGAAAAAGTTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCATCCTGCGTGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACCGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCGGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATCGATCAGCTTGGTGGCCCTGATAGGGTAGCGGAAATAACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAACGGAAAGGGTGTTACTTACCAGCCACGAAACTCGAAGGATGTGACTATGGAGATGGTCAACATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCAGCTGGTGTTTCGCTGCAGGCCGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTCACAAATCTCGGTGGAGAACGCAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGAGCCTTAACCCAAGGAGATCGAAGGGCTGGGTTGTCACTTAGTGCATATAATTATGACAGTGCTTATGGGAAAACGGCCTTGACGATGATGTACAGAGGAATAATGGAGCAGGATGCCTTGCCTGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGATTCAATTCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACCGTACTTGCGTCTGGGAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCGCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTACGAGGAAGTCCAAAGACAGTTCATGTTGATCCTGTCTCTGGGGCATCGACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATAACTTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTCTATGAATCCAGGAGGGACTGGTTGGGGAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTCCGCCCAGCTGTTGGGGAGTCACTAAGGGAAATGCCTCTCTCTGAGTTACGAAACAAATATCGAAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCACGGACCGAAGTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCACCAAAGTCATCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAAACAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCAAGGTTTAGCATGGGTACAAGATGTAGATGCTTGA 3801 45.96 MTQSPVPPSLAPPQPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPPPPLPPPPPSLPPSMPLPPPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNETRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKALWISVGSDLKYDARRDLDDVGATCIKVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRVRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEEERKKLLRCSCCEQLFHPACLDPPLLDTETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDRVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPDSIRDFIENAKAALNSVGIIRDTVLASGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGITWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMPLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQAHQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDA 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33084925 33117406 + CcPI632755_02g020130.1 Cco02g2013 172770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2013 1266 PANTHER STRAWBERRY NOTCH-RELATED 33 1263 IPR026741 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0031490(PANTHER)|GO:0042393(PANTHER)
Cco02g2013 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 430 IPR027417 -
Cco02g2013 1266 Pfam PHD-finger 668 712 IPR019787 -
Cco02g2013 1266 ProSitePatterns Zinc finger PHD-type signature. 668 712 IPR019786 -
Cco02g2013 1266 MobiDBLite consensus disorder prediction 600 620 - -
Cco02g2013 1266 MobiDBLite consensus disorder prediction 62 83 - -
Cco02g2013 1266 SUPERFAMILY FYVE/PHD zinc finger 657 718 IPR011011 -
Cco02g2013 1266 MobiDBLite consensus disorder prediction 600 661 - -
Cco02g2013 1266 Gene3D - 217 417 IPR027417 -
Cco02g2013 1266 FunFam Protein strawberry notch homolog 2 218 418 - -
Cco02g2013 1266 ProSiteProfiles Zinc finger PHD-type profile. 665 715 IPR019787 -
Cco02g2013 1266 MobiDBLite consensus disorder prediction 646 661 - -
Cco02g2013 1266 Pfam P-loop containing NTP hydrolase pore-1 187 486 IPR039187 -
Cco02g2013 1266 SMART PHD_3 667 713 IPR001965 -
Cco02g2013 1266 Pfam C-terminal domain on Strawberry notch homologue 756 1045 IPR026937 -
Cco02g2013 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 726 IPR013083 -
Cco02g2013 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 911 IPR027417 -
Cco02g2013 1266 MobiDBLite consensus disorder prediction 61 83 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58825 PF13872 AAA_34 6.60E-133 CL0023 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2013 K26273 - csv:101218295 2343.93