Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2016 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTAACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGACAGCGAAGGATCCAATACTTCCACCGACGTCACCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGGAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAACGAGATTTAGAAATGCGTTTTTGGCGAATTATTCGTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACGTGTACCACTGACCTCGCGGATCTGTTCTCAATTGGGGAATGCAAAACCCCAAGTAGCCCTTGTATCTATGATTACAGCTACGCAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAACTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTCGGCGGAGCCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATCGGAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCGAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTATGCCTTTTCCGGCCTTCAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1530 49.48 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLNGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVETAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKTRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPSSPCIYDYSYAGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGADGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIGISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFEFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSMPFPAFNIIGNILQQNHLWQFDFFRRKVGFAPSECV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33141458 33143198 - CcPI632755_02g020160.1 Cco02g2016 172773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2016 509 SUPERFAMILY Acid proteases 122 508 IPR021109 -
Cco02g2016 509 ProSiteProfiles Peptidase family A1 domain profile. 130 504 IPR033121 -
Cco02g2016 509 CDD pepsin_A_like_plant 129 508 IPR034161 -
Cco02g2016 509 PANTHER OS07G0603500 PROTEIN-RELATED 25 505 IPR051708 -
Cco02g2016 509 Gene3D Acid Proteases 115 323 IPR021109 -
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 386 397 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 Pfam Xylanase inhibitor N-terminal 130 323 IPR032861 -
Cco02g2016 509 Pfam Xylanase inhibitor C-terminal 357 504 IPR032799 -
Cco02g2016 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 Gene3D Acid Proteases 330 509 IPR021109 -
Cco02g2016 509 FunFam Aspartyl protease family protein 339 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2016 Cco-Chr2:33141458 Cco11g1698 Cco-Chr11:29796306 4.40E-48 dispersed
Cco02g2016 Cco-Chr2:33141458 Cco01g0596 Cco-Chr1:5930928 4.80E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34