Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2016 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTAACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGACAGCGAAGGATCCAATACTTCCACCGACGTCACCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGGAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAACGAGATTTAGAAATGCGTTTTTGGCGAATTATTCGTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACGTGTACCACTGACCTCGCGGATCTGTTCTCAATTGGGGAATGCAAAACCCCAAGTAGCCCTTGTATCTATGATTACAGCTACGCAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAACTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTCGGCGGAGCCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATCGGAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCGAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTATGCCTTTTCCGGCCTTCAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1530 49.48 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLNGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVETAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKTRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPSSPCIYDYSYAGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGADGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIGISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFEFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSMPFPAFNIIGNILQQNHLWQFDFFRRKVGFAPSECV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33141458 33143198 - CcPI632755_02g020160.1 Cco02g2016 172773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2016 509 SUPERFAMILY Acid proteases 122 508 IPR021109 -
Cco02g2016 509 ProSiteProfiles Peptidase family A1 domain profile. 130 504 IPR033121 -
Cco02g2016 509 CDD pepsin_A_like_plant 129 508 IPR034161 -
Cco02g2016 509 PANTHER OS07G0603500 PROTEIN-RELATED 25 505 IPR051708 -
Cco02g2016 509 Gene3D Acid Proteases 115 323 IPR021109 -
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 PRINTS Pepsin (A1) aspartic protease family signature 386 397 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 Pfam Xylanase inhibitor N-terminal 130 323 IPR032861 -
Cco02g2016 509 Pfam Xylanase inhibitor C-terminal 357 504 IPR032799 -
Cco02g2016 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco02g2016 509 Gene3D Acid Proteases 330 509 IPR021109 -
Cco02g2016 509 FunFam Aspartyl protease family protein 339 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2016 Cco-Chr2:33141458 Cco11g1698 Cco-Chr11:29796306 4.40E-48 dispersed
Cco02g2016 Cco-Chr2:33141458 Cco01g0596 Cco-Chr1:5930928 4.80E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2016 - - - 0.0