Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2018 ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTGTTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACTTCCGTCATTGAAGAACAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGCGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAAACTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCTATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGATGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAGTGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACGATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAACTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCAAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCTGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAATATGAATGTAAGTTCAGCGAGCTGTGTGATGTTGATTGGCAGGTTGTGCATGGAAGGAGAACTTGACCTAGCCGTGGATGTTTTTCTTTATACACTAGAAGAAGGCTTTATGTTGATGCCTCGAATTTGTAATCAGCTGCTGAGCCGCCTTCTTCATTTGGAGGACAGAAAAGACCATGCTCTTGTTCTTATACATAGAATGGAGGCTTTTGGATATGATATGAATACTCTTCTCCACGACAGTACTAAGTTACTTCTTCATGATCATTGGGAATCATTGCAAGCTAAAGCTTTCATGCCTAAATACACACGAGTCAAAACAGACATAGAGATGGACGGAGATCTGCCGCCGGCACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGCTTCACTTCTCCCATTCCGGCAAGCCAGTGATTTCCTACACTCAAAAGACTTGGAAACTCGATTCTAGAGAGCCAATGCACGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTATCGTTGAAGTTCAGTCAAATGCAAGGTCAGATTCTGCAGAGTTGCAACCGCGTACCAACTGTTCAATGAAATGCTCAACTCAAATGTTGTCTCATGGACCTCACTCATGGCGGTTATATCGAGATGGTCGGCTGAGTACATCTCTTTCACTGTTTGGGGCAATGCCGAGAAGTCCAGTTGTTCTCAACGACTTCACTTTTGTGAATGCAATCAAGGCGTGTTTGATCCTTTCAAATTTAAGAAATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTGGTTTTGGAGCTAATATTATGGTCTGTTCCTCGCTTATTGATATTGATTTCTGCTTATGCTCAGAATGCACATGGCAACGATGTGTTAACAGTATTTAGGGAGTTCAGTTGTTTGAGTTATGAACATCCAAATCCTAGTATGTTAGCTAGTAAAGGAACATATGATGCAGAAGAGAAAGTGATAAAGCTCCAAAGTGAACTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAATATTTAAACTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACCACACTTAAAAGCCTTTCTTACTAAAGTTTGA 3324 40.94 MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETVDPFEDGLEVISPHISSDVITSVIEEQSNPRLGFRLFIWSLRRKRLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKTSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDSASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNDINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCKPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFNMNVSSASCVMLIGRLCMEGELDLAVDVFLYTLEEGFMLMPRICNQLLSRLLHLEDRKDHALVLIHRMEAFGYDMNTLLHDSTKLLLHDHWESLQAKAFMPKYTRVKTDIEMDGDLPPAPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSGKPVISYTQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGIVEVQSNARSDSAELQPRTNCSMKCSTQMLSHGPHSWRLYRDGRLSTSLSLFGAMPRSPVVLNDFTFVNAIKACLILSNLRNGEKFHAYVEILVLELILWSVPRLLILISAYAQNAHGNDVLTVFREFSCLSYEHPNPSMLASKGTYDAEEKVIKLQSELVGNASKVKEISRIFKLVDGELSYVVQMATGLTSLQPHLKAFLTKV 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33152564 33160719 - CcPI632755_02g020180.1 Cco02g2018 172775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2018 1107 Pfam PPR repeat 130 159 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 306 334 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 668 694 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 496 522 IPR002885 -
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 654 801 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 94 262 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 413 455 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 336 385 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 239 280 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 528 572 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 161 210 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cco02g2018 1107 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 71 393 IPR051240 GO:0003729(PANTHER)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 396 472 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 528 560 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 444 470 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 306 338 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 269 299 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 199 233 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 562 596 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 130 163 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 279 395 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 476 653 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 SUPERFAMILY Lipocalins 1038 1107 IPR012674 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cco02g2018 1107 Gene3D - 818 954 IPR012674 -
Cco02g2018 1107 Gene3D - 1029 1107 IPR012674 -
Cco02g2018 1107 CDD lipocalin_heme-bd-THAP4-like 823 907 IPR014878 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cco02g2018 1107 Pfam THAP4-like, heme-binding beta-barrel domain 1041 1106 IPR014878 -
Cco02g2018 1107 Pfam THAP4-like, heme-binding beta-barrel domain 823 950 IPR014878 -
Cco02g2018 1107 SUPERFAMILY TPR-like 163 617 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cco02g2018 1107 SUPERFAMILY Lipocalins 818 948 IPR012674 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2018 Cco-Chr2:33152564 Cco06g0532 Cco-Chr6:5788910 5.60E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1189 . . . . . . . . . . . . . . . . Cpe16g00699 . . . . . . . Cla02g01845 Cam02g1952 Cec02g1980 Cco02g2018 Clacu02g1934 Cmu02g1883 Cre02g2194 . . . . . . . Cme11g01662 . . . . . . . . Sed05g3323 . . . . . . . . Bhi10g00914 Tan05g0568 Cmetu11g1408 . Hepe08g0663 . . . . . . . . . . Csa06g01135 Chy11g01057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010828 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30