Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2018 ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTGTTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACTTCCGTCATTGAAGAACAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGCGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAAACTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCTATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGATGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAGTGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACGATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAACTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCAAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCTGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAATATGAATGTAAGTTCAGCGAGCTGTGTGATGTTGATTGGCAGGTTGTGCATGGAAGGAGAACTTGACCTAGCCGTGGATGTTTTTCTTTATACACTAGAAGAAGGCTTTATGTTGATGCCTCGAATTTGTAATCAGCTGCTGAGCCGCCTTCTTCATTTGGAGGACAGAAAAGACCATGCTCTTGTTCTTATACATAGAATGGAGGCTTTTGGATATGATATGAATACTCTTCTCCACGACAGTACTAAGTTACTTCTTCATGATCATTGGGAATCATTGCAAGCTAAAGCTTTCATGCCTAAATACACACGAGTCAAAACAGACATAGAGATGGACGGAGATCTGCCGCCGGCACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGCTTCACTTCTCCCATTCCGGCAAGCCAGTGATTTCCTACACTCAAAAGACTTGGAAACTCGATTCTAGAGAGCCAATGCACGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTATCGTTGAAGTTCAGTCAAATGCAAGGTCAGATTCTGCAGAGTTGCAACCGCGTACCAACTGTTCAATGAAATGCTCAACTCAAATGTTGTCTCATGGACCTCACTCATGGCGGTTATATCGAGATGGTCGGCTGAGTACATCTCTTTCACTGTTTGGGGCAATGCCGAGAAGTCCAGTTGTTCTCAACGACTTCACTTTTGTGAATGCAATCAAGGCGTGTTTGATCCTTTCAAATTTAAGAAATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTGGTTTTGGAGCTAATATTATGGTCTGTTCCTCGCTTATTGATATTGATTTCTGCTTATGCTCAGAATGCACATGGCAACGATGTGTTAACAGTATTTAGGGAGTTCAGTTGTTTGAGTTATGAACATCCAAATCCTAGTATGTTAGCTAGTAAAGGAACATATGATGCAGAAGAGAAAGTGATAAAGCTCCAAAGTGAACTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAATATTTAAACTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACCACACTTAAAAGCCTTTCTTACTAAAGTTTGA 3324 40.94 MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETVDPFEDGLEVISPHISSDVITSVIEEQSNPRLGFRLFIWSLRRKRLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKTSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDSASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNDINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCKPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFNMNVSSASCVMLIGRLCMEGELDLAVDVFLYTLEEGFMLMPRICNQLLSRLLHLEDRKDHALVLIHRMEAFGYDMNTLLHDSTKLLLHDHWESLQAKAFMPKYTRVKTDIEMDGDLPPAPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSGKPVISYTQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGIVEVQSNARSDSAELQPRTNCSMKCSTQMLSHGPHSWRLYRDGRLSTSLSLFGAMPRSPVVLNDFTFVNAIKACLILSNLRNGEKFHAYVEILVLELILWSVPRLLILISAYAQNAHGNDVLTVFREFSCLSYEHPNPSMLASKGTYDAEEKVIKLQSELVGNASKVKEISRIFKLVDGELSYVVQMATGLTSLQPHLKAFLTKV 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33152564 33160719 - CcPI632755_02g020180.1 Cco02g2018 172775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2018 1107 Pfam PPR repeat 130 159 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 306 334 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 668 694 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat 496 522 IPR002885 -
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 654 801 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 94 262 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 413 455 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 336 385 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 239 280 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 528 572 IPR002885 -
Cco02g2018 1107 Pfam PPR repeat family 161 210 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cco02g2018 1107 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 71 393 IPR051240 GO:0003729(PANTHER)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 396 472 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 528 560 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 444 470 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 306 338 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 269 299 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 199 233 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 562 596 IPR002885 -
Cco02g2018 1107 NCBIfam pentatricopeptide repeat 130 163 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 279 395 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 Gene3D Tetratricopeptide repeat domain 476 653 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 SUPERFAMILY Lipocalins 1038 1107 IPR012674 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cco02g2018 1107 Gene3D - 818 954 IPR012674 -
Cco02g2018 1107 Gene3D - 1029 1107 IPR012674 -
Cco02g2018 1107 CDD lipocalin_heme-bd-THAP4-like 823 907 IPR014878 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cco02g2018 1107 Pfam THAP4-like, heme-binding beta-barrel domain 1041 1106 IPR014878 -
Cco02g2018 1107 Pfam THAP4-like, heme-binding beta-barrel domain 823 950 IPR014878 -
Cco02g2018 1107 SUPERFAMILY TPR-like 163 617 IPR011990 GO:0005515(InterPro)
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cco02g2018 1107 SUPERFAMILY Lipocalins 818 948 IPR012674 -
Cco02g2018 1107 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2018 Cco-Chr2:33152564 Cco06g0532 Cco-Chr6:5788910 5.60E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2018 - - - 0.0