Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2020 ATGATACTACGCTCACAAGCGTCCTCTGTTTTCACAATTTCCTCTACAGTTACCGATAATCACACGTATAAGTATCACCGGCGGCAACTTCAGCTTCCTGTTTACGGCTGTGGAGCGAGTTTTCATGTTCGTGTTTCTAAAATTTTACTTCCGAGGGCTGCGGTCACGGCCGGTTCCAGCGGCGGAAGTCTGACTAGAAGGAAATATAGGAATCGTTTTAACGACTTTAGGTCTTCTGCAAGTGCCTCCGATTTGTCCTCCTCGACTCAGCCGCCGGATATTCCAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCGCAGAGGCCTGGACCTGATCTGAAAATGCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTCCTCGGACGATGAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGTCCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGTGACTTCTACAACGCTCTTGCTAACAAGGACCAAGAACAGTTTACTAAGCAACTCCTCTACTACCTAGGTGCCTTCGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAGTCCATTATTGATAATCCAGACCAGCGGATTGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTTTTCAATTCTACCGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCGTTGTTTGTTGTTCTTCTTTTATATTCGATTGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATCTGAACTTCTTGCAAGAAAAAAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAACGGTTTAGAAGTGCTGTTGAGAATTTAACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTATCGCTACCTCATTCAGATTCTTCCAGCTGCTGTTGTTGCCCCAATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTTGGGGATTTTTCCCTCATTGTATATCAGTTTCAGGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATGTGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCTAGACAAACGCCTGAAATTATTGGAGATAGAGAATATGACTTTAGAGGCACCAAATGGAGCTACTTTGGTGAGAGACTTGGCGTTAATAGTTGAAGAAAAGGAGCATTTACTGGTAATGGGACCCAGTGGATGTGGCAAGACCTCATTGTTAAGAGTTTTGGCAGGTCTTTGGAATGTTGGAAAAGGAAAAATCACGTTTTATATAAAAGACTATCCGGAGCAGTTAGTTTCTCAAAATGGATTGCAAACCGAAGCACATACAGGAGAAGATGTATCCGAAGAAAATAGTAGACCACTCAACAAGAATTATCGAGGGATATTTTTCGTTCCTCAAAGACCATATATGGTTCTGGGTACACTACGTCAGCAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTCATGCTGAACCAAATGTATTCCCTTCCTTTTTGACAGGTGCATCGAATATCAACAAGGTTGGCGAAAATCCTGATAAACCAACAACGGATGAGCTAATCAAGGTTCTGGATAAAGTGGGTCTTGAATACCTATTGACTCGTTTCAGTAGTCTGGACACAACTTGCGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTCTATTACTTTCAAGGCCAAAGTTAGTCCTGCTGGATGAGTCTACTAGTGCGTTAGACGAAGCGAATGAGGCACGTTTATACAAGCAAATCGCAGGTGCTGGAATTACATATATTAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCACATATCCAAGTTGTCTGATGGCAATGAACGCAATTGGAACATTGAACCCATTATTCGGGATGATTTTCGTTTGCAGAGGAGAATCTATTCTATGAAGGATCTTAACGATGGGATATCGCCTCAAATGACGGGTAAAGGATATCAGAAAGTTACCAACGGTGATGTAGGTGAGGTTTCAACCATTTCGCTTGTCCTTTCCTTTAAGATTGAATTTGCTGCATAA 2448 42.52 MILRSQASSVFTISSTVTDNHTYKYHRRQLQLPVYGCGASFHVRVSKILLPRAAVTAGSSGGSLTRRKYRNRFNDFRSSASASDLSSSTQPPDIPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWSSDDEVQARWQLAAVFALSLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVVLLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHVESSPLLESNGSMALDKRLKLLEIENMTLEAPNGATLVRDLALIVEEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSQNGLQTEAHTGEDVSEENSRPLNKNYRGIFFVPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAEPNVFPSFLTGASNINKVGENPDKPTTDELIKVLDKVGLEYLLTRFSSLDTTCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAGAGITYISIGHRRTLRNHHNSILHISKLSDGNERNWNIEPIIRDDFRLQRRIYSMKDLNDGISPQMTGKGYQKVTNGDVGEVSTISLVLSFKIEFAA 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33173019 33180659 + CcPI632755_02g020200.1 Cco02g2020 172777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2020 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 744 IPR027417 -
Cco02g2020 815 MobiDBLite consensus disorder prediction 79 110 - -
Cco02g2020 815 Gene3D - 475 752 IPR027417 -
Cco02g2020 815 MobiDBLite consensus disorder prediction 79 93 - -
Cco02g2020 815 Gene3D ABC transporter type 1, transmembrane domain 102 439 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco02g2020 815 Pfam ABC transporter 500 703 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco02g2020 815 CDD ABCD_peroxisomal_ALDP 483 745 - -
Cco02g2020 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 773 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco02g2020 815 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco02g2020 815 Pfam ABC transporter transmembrane region 2 135 390 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco02g2020 815 SUPERFAMILY ABC transporter transmembrane region 119 436 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco02g2020 815 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 84 757 IPR050835 -
Cco02g2020 815 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 425 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco02g2020 815 SMART AAA_5 508 747 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2020 Cco-Chr2:33173019 Cco10g0838 Cco-Chr10:17538327 1.50E-45 dispersed
Cco02g2020 Cco-Chr2:33173019 Cco02g2026 Cco-Chr2:33225499 7.80E-07 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2020 - - - 0.0