Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2029 ATGAAGTTCTGTTCAGCATCAGTGTTTCCTCTGTTTTTTGTTATTATTAATCTACTTCACCTTACCATTGCTGACCTGGAATCAGACAAGCAAGCTCTTCTTGAATTTGCATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAACGATACTACATCAGTATGCACATCTTGGGTTGGCATTACTTGCAGTGCAGATGGAAATCATGTGCTTACCCTTCGATTACCTGGCATTGGACTTGTGGGTTCAATTCCTCCTAACACTCTCGGGAAACTTGATGGCCTCAAGATTCTCAGTCTCCGTTCCAACCTCCTTAGTGGAAAAATACCGTCCGATATTACCTCACTTCCTTCTCTCCATTATCTTTATCTCCAACATAATAACTTCTCTGGCGATGTCCCTTCCTCCCTTTCACCTACTCTTAATGTATTGGATCTATCATTCAATTTATTAGAAGGAAAGATTCCAAAGGCCGTACAAAATTTGACACAACTAACTGGATTGAATCTCCAGAACAACAATCTTTCTGGTTCTATACCTGATATCAACCTCCCTAAGCTCAAGCATTTCAATATAAGTTATAACCATCTTAATGGTCTTATCCCAACTTTCTTTAATACATTCCCAAATTCGGCCTTCATTGGAAATCCTTTATTATGTGGATCACCTCTAAAAGCTTGCTCCACAGTCCTATCTCCAGCTCCTCATGCTCCATCTTCACCTGCCCTTTCTCAAAAGCAGAGCTCCAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTTCTCGTAGTCCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGATGGTGGAGGCGCTGGCGCTAGAAAAGGGAAGGTTTCTGGTGGTGGGAGAAGTGAAAAACCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCATTTAATTTTGATCTTGAAGATCTATTAAGGGCTTCGGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTCGAGGAACCTACCACTGTTGTGGTAAAAAGATTGAAGGAGGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTCGGGCAGCACCCAAATGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCTGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGACAGAACTCCACTTGACTGGGACTCAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGTATTGCTCATATTCATGCAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTCCTCCTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAGGTGATCGAAGCTCGCAAACACACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTCGAAATGTTAACTGGAAAAGCTCCCCTCCAATCACCTGGACGTGACGAAATGGTCGATCTTCCTCGGTGGGTACAGTCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAACTAATGAGATACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCTAAGTTGCCCGACATGAGACCGAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCGAAGGACTCAAATGTGCAGACCCCATGA 1893 43.58 MKFCSASVFPLFFVIINLLHLTIADLESDKQALLEFASSVPHRRSLNWNDTTSVCTSWVGITCSADGNHVLTLRLPGIGLVGSIPPNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLHYLYLQHNNFSGDVPSSLSPTLNVLDLSFNLLEGKIPKAVQNLTQLTGLNLQNNNLSGSIPDINLPKLKHFNISYNHLNGLIPTFFNTFPNSAFIGNPLLCGSPLKACSTVLSPAPHAPSSPALSQKQSSKKLKMGVIIAIAVGGFFLLFLVVLFVVLCCLKKKDGGGAGARKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGDRTPLDWDSRVKIALATAKGIAHIHAVGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33256133 33260059 - CcPI632755_02g020290.1 Cco02g2029 172786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2029 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Cco02g2029 630 SUPERFAMILY L domain-like 39 225 - -
Cco02g2029 630 Pfam Protein tyrosine and serine/threonine kinase 341 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2029 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Cco02g2029 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cco02g2029 630 MobiDBLite consensus disorder prediction 296 310 - -
Cco02g2029 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515(InterPro)
Cco02g2029 630 CDD STKc_IRAK 343 606 - -
Cco02g2029 630 PANTHER OS05G0588300 PROTEIN 12 620 IPR050994 -
Cco02g2029 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Cco02g2029 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2029 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Cco02g2029 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Cco02g2029 630 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515(InterPro)
Cco02g2029 630 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Cco02g2029 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Cco02g2029 630 MobiDBLite consensus disorder prediction 606 621 - -
Cco02g2029 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Cco02g2029 630 MobiDBLite consensus disorder prediction 285 310 - -
Cco02g2029 630 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Cco02g2029 630 FunFam pollen receptor-like kinase 1 305 412 - -
Cco02g2029 630 Gene3D Ribonuclease Inhibitor 86 231 IPR032675 -
Cco02g2029 630 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Cco02g2029 630 MobiDBLite consensus disorder prediction 606 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2029 Cco-Chr2:33256133 Cco04g0803 Cco-Chr4:23360717 1.10E-176 dispersed
Cco02g2029 Cco-Chr2:33256133 Cco04g1455 Cco-Chr4:29990859 3.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86592 PF00069 Pkinase 2.30E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2029 - - - 0.0