Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2034 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCTTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGCGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCCGCTCGCTCAAAAGAGAGGAAGGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAGCTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACCGGGGAAATGATGAGCCCGTCTGAGTCTTTTAACTTAGGAATGCATCACATGGCATACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACCAGGATCTGCTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTGCTTCCATCAGAGTCTCATTCTCTCTCTGAGGTTCTGCAGACCGACTCTCTCGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGCCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1167 48.24 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQPGSAGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33335363 33338609 + CcPI632755_02g020340.1 Cco02g2034 172791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2034 388 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2034 388 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2034 388 Coils Coil 206 233 - -
Cco02g2034 388 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2034 388 MobiDBLite consensus disorder prediction 123 165 - -
Cco02g2034 388 MobiDBLite consensus disorder prediction 1 19 - -
Cco02g2034 388 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2034 388 MobiDBLite consensus disorder prediction 36 59 - -
Cco02g2034 388 MobiDBLite consensus disorder prediction 1 64 - -
Cco02g2034 388 Coils Coil 254 285 - -
Cco02g2034 388 Gene3D - 189 242 - -
Cco02g2034 388 FunFam probable transcription factor PosF21 189 242 - -
Cco02g2034 388 MobiDBLite consensus disorder prediction 20 34 - -
Cco02g2034 388 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 337 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g2034 388 MobiDBLite consensus disorder prediction 316 348 - -
Cco02g2034 388 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2034 388 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2034 Cco-Chr2:33335363 Cco07g0536 Cco-Chr7:6877146 8.70E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58827 PF00170 bZIP_1 1.30E-08 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2034 - - - 0.0