Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2037 ATGTTAAAGAATACTCGAGATAGGAACCCCAGCAGCAACCTCCGTGATAGCAACTCGGAATTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGACGAAGTCTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAGCTCAATGAGGTCCTCCGATCGCCCGAGGATTTGCAGCGGCTGTATTCAGAGGTTCATCTACTTAGCACACTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGACGTTGATCGCAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAATATAGGCGAATTGATATCAGAGCCATTAAGAGCTGGGCACGCCAGATTCTGCAGGGGCTCATTTATTTGCACGAACACGATCCCCCGATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCCCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAACTATACGAGGAGAATTACAACGAACTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTAGAGATGCTTACTTCTGAGTACCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGAAAGCTGCCAGCAGCATTGTACAAGATTCAAGATATGGATGCGCAGAGATTTGTTAAGAAATGCTTGTTACCAGTTTCGATGAGGGCGTCTGCAAAGGAACTCTTGTCCGATCATTTTCTCAAAGTTGATGGAGATAAACCTTCTTCGAAGGAGAGGACTCCAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGGAAGCTGAACCCCGAAGACAATACCCTCTTTCTCAGAGTTCAGATTGCCGATAAAGAAGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAGTTGGAGATATCCGATTGGGAGCCGTTCGAAATAGCGGACATGATTGAAGGAGAGATATGGGCTCTAGTTCCGAACTGGAATAGAAGTGAGTTATCCAACCATAACCTCAGCTTTAGCTATGCAGAAGAAGATGATAATGCATCTCATCATACTTTTCGCTCAGTCTCCTCGTCGTCCCAAGCAACAACTTTGGGTCTCATCACCTCCCCTAGAACAAACCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGACGATGTGCTTGATGATAGCAGTTCACAGTGCTCATCGGCGTCGGGAAAATATTCCAACTTGAATTACATCAGCAGCGACGAGAACGAGACCAGTATGAGTTCGGTCCAGATAGATCAACATACCAACATCGATAAGATTCACAATTCCTCAAGATTTTGTCCTGTTGAGAACCGGAAGAACAAGGATTTCTTGGGTGGACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGATTGTCTCAAGGAGTTGCCTCGAGGGGAAGGGATGGTTGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTGGAGGAGGTGAATAGAAGACGATTATTCAAGACGGTTGGAGCAGTGGAAAGCATCGGATTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGAGGCTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGTGAGAACGAGGAGAAACAGCGATATTAGGTGGCAAGATGTTGGAAGGAGAACATGA 1923 45.4 MLKNTRDRNPSSNLRDSNSEFGYVETDPTCRYGRFDEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRRIDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDMDAQRFVKKCLLPVSMRASAKELLSDHFLKVDGDKPSSKERTPNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDNTLFLRVQIADKEGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEIWALVPNWNRSELSNHNLSFSYAEEDDNASHHTFRSVSSSSQATTLGLITSPRTNQNISNGFSWFPDDVLDDSSSQCSSASGKYSNLNYISSDENETSMSSVQIDQHTNIDKIHNSSRFCPVENRKNKDFLGGLLYKQSQCAIAGLSQGVASRGRDGCKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRGSSRQPIGNRSSDVVRTRRNSDIRWQDVGRRT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33377409 33380708 + CcPI632755_02g020370.1 Cco02g2037 172794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2037 640 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 595 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco02g2037 640 MobiDBLite consensus disorder prediction 603 626 - -
Cco02g2037 640 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2037 640 MobiDBLite consensus disorder prediction 603 622 - -
Cco02g2037 640 CDD STKc_WNK 31 291 - -
Cco02g2037 640 FunFam Probable serine/threonine-protein kinase WNK1 17 114 - -
Cco02g2037 640 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Cco02g2037 640 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Cco02g2037 640 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g2037 640 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Cco02g2037 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2037 640 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2037 640 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2037 640 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2037 Cco-Chr2:33377409 Cco04g0819 Cco-Chr4:23539503 1.40E-163 dispersed
Cco02g2037 Cco-Chr2:33377409 Cco06g0628 Cco-Chr6:6951084 1.70E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86593 PF00069 Pkinase 3.30E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2037 K08867 - csv:101203757 1162.9