Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2039 ATGCCGGAGATCGAACCATCTTCCCCCGACAACAACGCCCTTTTCGGCAAATATGAGCTCGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTTCGCTCCGGCCAAAGCGTCGCCGTCAAGGTTATCAACAAGAAGAAAATCTACGGCACAACCTTAATGTTCAACATCAAGCGGGAAATCGCCATTATGCGACGTCTCCGCCATCCAAACATCGTTAAACTCCACGAGGTTCTAGCTACCAAATCGAAGATCTACTTCGTCATGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCTAAGATCGCCAAGGGCAGATTCAGTGAGGATCTCAGCCGGAAATTCTTCCAGCAGTTGATCTCCGCCGTTGGATTCTGTCACACGCGTGGAATCTACCATCGCGATCTGAAGCCGGAGAATCTTCTCGTCGATGAGAATGGAAATCTGAAGGTCTCTGACTTTGGTCTCAGTGCCGTAACGGAACAGATCCGCGCCGATGGCCTTTTACACACTCTTTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTTTGTCGAAAAAGGGCTACGACGGTGCGAAAGTTGATGTGTGGTCATGTGGTGTGATTCTTTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATCCGAATCTCATGGCCATGTATAAGAAGATTTACAAGGGGGAATACCGGTGCCCTAAATGGATGTCGCCGGATCTCAAGAGATTTCTGTCGCGACTTCTCGATACGAATCCCGAAACGAGGATAACCATTGAAGAGATTCTAAGTGATCCATGGTTCAGAAAGGGGGGAAATACAGAGATCAATTTCTACGATGATTACGAGATGAAATCGGAAGAGAAGGACGAATCACCGTCGACGAATTTGAACGCATTCGACATTATATCTTTCTCCTCAGGATTGGATCTCTCTGGTTTATTCGACAATTCACATAACGCAGTGGACGACAGTGAGCGATTCATATCGGCAGAATCGCCGGAGAAGATCGTGGAAAAACTTGAGGAATTTGCTAGGGCTGAGAATTTGAAGGTGAAGAAACATAAAGAATTTGGAGTTGAATTGGATGCGCAGAGTCGTAATTTGGTCGTCGGAATTGAAATTTTCGGATTAACCGATGGATTGGTGGTGGTGGAGGTGAGAAGAAAATGCGGAGATTCAGAATCGTTTAAGCAAATGTTGAAGAAGAAGCTGAAAGGTCATCTCACTGGCAATGAAGCGTCGACGTCGACGTCCCGATAA 1275 48.24 MPEIEPSSPDNNALFGKYELGKLLGCGAFAKVYHARDLRSGQSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKSKIYFVMEFVKGGELFAKIAKGRFSEDLSRKFFQQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSPDLKRFLSRLLDTNPETRITIEEILSDPWFRKGGNTEINFYDDYEMKSEEKDESPSTNLNAFDIISFSSGLDLSGLFDNSHNAVDDSERFISAESPEKIVEKLEEFARAENLKVKKHKEFGVELDAQSRNLVVGIEIFGLTDGLVVVEVRRKCGDSESFKQMLKKKLKGHLTGNEASTSTSR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33398007 33399281 + CcPI632755_02g020390.1 Cco02g2039 172796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2039 424 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Cco02g2039 424 SUPERFAMILY Protein kinase-like (PK-like) 15 279 IPR011009 -
Cco02g2039 424 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2039 424 FunFam Non-specific serine/threonine protein kinase 8 299 - -
Cco02g2039 424 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Cco02g2039 424 Gene3D Kinase associated domain 1, KA1 297 415 - -
Cco02g2039 424 CDD CIPK_C 302 413 - -
Cco02g2039 424 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Cco02g2039 424 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g2039 424 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cco02g2039 424 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Cco02g2039 424 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2039 424 ProSiteProfiles Plant heme peroxidase family profile. 25 399 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2039 424 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
Cco02g2039 424 FunFam Non-specific serine/threonine protein kinase 296 416 - -
Cco02g2039 424 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2039 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2039 Cco-Chr2:33398007 Cco04g0824 Cco-Chr4:23648517 1.10E-142 dispersed
Cco02g2039 Cco-Chr2:33398007 Cco02g2040 Cco-Chr2:33401936 1.00E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86594 PF00069 Pkinase 1.70E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2039 - - - 0.0