Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2040 ATGGAGAATAAGGCAAGTGTGATGGTTCAACGATATGAATTAGGGAGATTGCTTGGCCAAGGAACCTTCGCAAAGGTGTATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATTACAAAGGCTTCGCTAATCGATCAGATTAAGCGTGAAATATCGATTATGAGACTAGTTAGACATCCTAATATTCTACGTCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGCAGGAGGACATTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGCAGGGGAGTGTATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGGTTGCTTCACACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCTCTCGTGAAGTGCGGCGGTTGCTAAGCAGGATGCTTGATCCAGACCCCATTGCTAGGACTTCAATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATCTAAGAAGTGGAATAGAAAGTAATGCTGTAGCGACTGAAGATGCAGCAGCTGTTTCTGGACTGTTCGAGAGAAGTGTGCCAGCAGAAGGAAATCAAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCGGGGTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGAGTACAGAAGAAAGAAGCAGGCCTATTGAAATTTGAGGCACTAACAGAGGGAAGAAAGGGGGTATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAACGGAGACACATTGGAATATCAGAAAATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCATCAACCGCAGGATCGGGTTCGAGATCCTTATACAGAGCAAGAGGGTGCGTCACAACCGCAGTAG 1416 41.88 MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLQEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFSREVRRLLSRMLDPDPIARTSIAMIRQSSWFKKGLRSKNLRSGIESNAVATEDAAAVSGLFERSVPAEGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGRKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPHQPQDRVRDPYTEQEGASQPQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33401936 33403351 - CcPI632755_02g020400.1 Cco02g2040 172797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2040 471 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Cco02g2040 471 CDD CIPK_C 315 429 - -
Cco02g2040 471 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Cco02g2040 471 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2040 471 Gene3D Kinase associated domain 1, KA1 309 434 - -
Cco02g2040 471 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2040 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2040 471 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cco02g2040 471 MobiDBLite consensus disorder prediction 438 471 - -
Cco02g2040 471 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Cco02g2040 471 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cco02g2040 471 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Cco02g2040 471 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2040 471 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Cco02g2040 471 CDD STKc_SnRK3 11 265 - -
Cco02g2040 471 FunFam Non-specific serine/threonine protein kinase 2 290 - -
Cco02g2040 471 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g2040 471 MobiDBLite consensus disorder prediction 438 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2040 Cco-Chr2:33401936 Cco04g0826 Cco-Chr4:23749442 8.10E-174 dispersed
Cco02g2039 Cco-Chr2:33398007 Cco02g2040 Cco-Chr2:33401936 1.00E-111 tandem
Cco02g2040 Cco-Chr2:33401936 Cco04g1496 Cco-Chr4:30367579 2.40E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86595 PF00069 Pkinase 2.50E-75 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2040 - - - 0.0