Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2043 ATGGCTTTTACTACTTCTCACACTCCAAAACATGTGGTGGTTTCTGTTTTAGCTTTGCAGCTAACCTTCCTTCTCATGCCCACCTCTTCTGCCCAACTCTCTACTTCTTTCTACTCCAAGACTTGCCCTAAACTTCTCTCTATAGTTCGCTCCGGCGTTCAATCTGCCATCGCTAAGGAAACTCGTATAGGCGCTTCCCTCCTTCGTCTTCACTTCCATGACTGTTTTGTTAACGGATGTGATGGGTCAATTCTTTTAGATGATACTGCAACTTTTAGAGGAGAGCAAACTGCGCCTCCGAATAATAGGTCTATTAGAGGCTTTGATGTCATAAAAGCCATCAAGAGTAACGTAGAAAAAGTTTGTCCTGGTGTGGTCTCCTGCGCTGATATTTTGACTCTTACTGCACGTGACTCTGTTAACATTTTGGGAGGGCCAACTTGGGACGTGAAATTAGGAAGAAGAGATTCAAAAACAGCCAGCTTCTCCACTGCCAGCAGTGGCATCATCCCTCCACCCACTTCAACCCTTGCCAACCTCATTAATCGATTCAGTGCTGTAGGCCTCTCCGCCAAAGACATGGTTGCCTTGTCTGGTGCGCACACGATAGGCCTAGCAAGGTGTGTATCCTTTAGGAATCGCATATACAATGAGAGCAACATAGACGCTTCATTCGCAAAGCTAAGACAGAGGAATTGTCCAAGAAGTGGAGGAGATGACAATCTTGCCCCTCTAGACGTTGTTACCCCAAAGCTTTTCGACAACCATTACTATAAGAACCTTTTGAAAAAAAAGGGGTTGCTTCACTCCGATCAAATCCTCCACAACGGCGGATCCACTGATTCTTTAGTCGAACAGTATAGTCAAAATGATAAGACTTTCGACGCCGATTTTGTGGCAGCAATGATTAAAATGGGAGACATCCGACCGCTCACGGGATCACAAGGCGAGATTAGAAAGGTCTGCAGCAGATCCAACTGA 981 45.57 MAFTTSHTPKHVVVSVLALQLTFLLMPTSSAQLSTSFYSKTCPKLLSIVRSGVQSAIAKETRIGASLLRLHFHDCFVNGCDGSILLDDTATFRGEQTAPPNNRSIRGFDVIKAIKSNVEKVCPGVVSCADILTLTARDSVNILGGPTWDVKLGRRDSKTASFSTASSGIIPPPTSTLANLINRFSAVGLSAKDMVALSGAHTIGLARCVSFRNRIYNESNIDASFAKLRQRNCPRSGGDDNLAPLDVVTPKLFDNHYYKNLLKKKGLLHSDQILHNGGSTDSLVEQYSQNDKTFDADFVAAMIKMGDIRPLTGSQGEIRKVCSRSN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33411789 33413207 - CcPI632755_02g020430.1 Cco02g2043 172800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2043 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PANTHER PEROXIDASE 72-RELATED 22 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 Pfam Peroxidase 49 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 CDD secretory_peroxidase 32 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2043 326 Gene3D Peroxidase, domain 2 171 305 - -
Cco02g2043 326 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 FunFam Peroxidase 171 305 - -
Cco02g2043 326 FunFam Peroxidase 36 188 - -
Cco02g2043 326 Gene3D - 37 323 - -
Cco02g2043 326 SUPERFAMILY Heme-dependent peroxidases 32 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
Cco02g2043 326 ProSiteProfiles Plant heme peroxidase family profile. 32 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2043 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2043 Cco-Chr2:33411789 Cco02g2045 Cco-Chr2:33423415 2.80E-133 dispersed
Cco02g2043 Cco-Chr2:33411789 Cco02g2044 Cco-Chr2:33418598 1.10E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2043 K00430 - csv:101207371 577.785