Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2045 ATGGCAATTACCATGGTTTCTTCTCATAACAAAATACCAATGACATTCGCATTAGCTTTATTGGCAATATTCATGGGGAGCTCCTCAGCTCAGTTGTCCCCCAACTTCTACTACAAGAGTTGTCCTAAGCTCCTTGGTATAGTTCGAGCTGGTGTTCGATCTGCCGTTGCTAAGGAAGCTCGCATGGGCGCTTCTCTTCTCCGGCTCCACTTTCACGATTGCTTCGTTAATGGTTGCGATGGATCCATCCTTCTAGATGATACTCCTACATTTATAGGAGAGCAAACTGCAGCTCCTAATAATAGATCTGTTAGAGGGTTCAACGTGATTGAGAGTATAAAGAAAAACATAGAAAAAATTTGTCCTGCCGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGCGACTCCGTTGTAGCATTGGGAGGGCCAAGCTGGAAAGTGAAATTGGGAAGAAGAGATTCCAAAACAGCCAGTTTCTCTGATGTCACTGGTGCTATTCCTCCACCAACCTCCACTCTTGCCACCCTCATCAATCGATTCAATACCAAAGGCCTTTCTCGAAAGGATTTGGTTGCTTTATCTGGGGCTCATACAATTGGGAAAGCAAGGTGTTTGTTTTTCAAGAACCGCATTTATAATGAAACCAACATCAACAAGTCGTTCGCTAAGGAGAGGCGAAGGAACTGCCCAAAGAACGGAGGAGATGACAATCTTGCGCCTTTGGACTTCAGAACCCCAAAGCTTTTTGACAACTATTACTACAAGAACCTTTTGGAGAAAAAGACTTTGCTCCGCTCCGATCAGGTGCTACACGATGGCGGATCCACTGATTCTTTGGTTGAACTCTATAGTCACGACAATGCTGCCTTTGAATCTGACTTCGTGACAGCTATGATCAAGATGGGTGACATTCAACCGCTCACTGGATCGCGAGGCGAGATCCGAAAAGTCTGCAGTCGACCCAACTAA 975 45.03 MAITMVSSHNKIPMTFALALLAIFMGSSSAQLSPNFYYKSCPKLLGIVRAGVRSAVAKEARMGASLLRLHFHDCFVNGCDGSILLDDTPTFIGEQTAAPNNRSVRGFNVIESIKKNIEKICPAVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLATLINRFNTKGLSRKDLVALSGAHTIGKARCLFFKNRIYNETNINKSFAKERRRNCPKNGGDDNLAPLDFRTPKLFDNYYYKNLLEKKTLLRSDQVLHDGGSTDSLVELYSHDNAAFESDFVTAMIKMGDIQPLTGSRGEIRKVCSRPN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33423415 33424876 - CcPI632755_02g020450.1 Cco02g2045 172802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2045 324 PANTHER PEROXIDASE 72-RELATED 21 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 FunFam Peroxidase 169 303 - -
Cco02g2045 324 Gene3D Peroxidase, domain 2 169 303 - -
Cco02g2045 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 SUPERFAMILY Heme-dependent peroxidases 31 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 CDD secretory_peroxidase 31 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2045 324 Gene3D - 35 321 - -
Cco02g2045 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cco02g2045 324 Pfam Peroxidase 48 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2045 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Cco02g2045 324 FunFam Peroxidase 35 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2043 Cco-Chr2:33411789 Cco02g2045 Cco-Chr2:33423415 2.80E-133 dispersed
Cco02g2045 Cco-Chr2:33423415 Cco11g0594 Cco-Chr11:6349590 3.10E-108 dispersed
Cco02g2044 Cco-Chr2:33418598 Cco02g2045 Cco-Chr2:33423415 7.30E-155 tandem
Cco02g2045 Cco-Chr2:33423415 Cco02g2046 Cco-Chr2:33427945 2.60E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2045 K00430 - csv:101208108 567.385