Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2046 ATGGTTGTAGCTTTAGCAATAACTTTATTGGCGGTGTTCACTGGGAACTCTTCAGCTCAGCTCTCTCCCAACTTCTATTACGATAGTTGCCCCAAGTTGCTCAGTACCGTTAGAGCTGGTATCCATTCCGCCGTCGCTCAAGAAGCTCGCATGGGTGCTTCCCTCCTTCGCCTTCACTTTCACGATTGTTTTGTTAACGGTTGTGATGGATCAATTCTTCTAGAAGACACTCCTACGTTTACAGGAGAGCAAACAGCAGCTCCCAACAACAATTCTGTTAGAGGGTTCAACGTGATTGAGAGCATAAAGAAAAATGTTGAAAAAATTTGCCCTAGCGTCGTCTCTTGTGCTGATATTTTAACTCTTTCAGCTCGTGACTCTGTTGTAGTGCTTGGAGGGCCAAGTTGGGAGGTGAAGTTGGGAAGAAGAGATTCTAAAACAGCTAGCTTCTCCGACGTCACAGGTGCTATTCCTCCGCCAACCTCTAACCTCGACACTCTCATCAATCGATTCAACTCCAAAGGCCTCTCCCCTCGTGACTTGGTTGCCTTATCTGGGGCCCACACAATCGGGCAAGCAAAGTGTTTGTTTTTCAAGAACCGTATATATAATGAGACCAACATTGACAAGTCGTTTGCTGAGGAGAGACAAAGAAATTGCCCAACAAATGGAGGCGACGAAAATCGTGCTCCTTTGGACTTTAGAACCCCAAAGCTTTTCGACAACTACTACTACAAGAACCTCTTGGAGAAGAAGGCTTTGCTCCGCTCCGATCAGGTGCTCCACGATGGTGGATCCACTGATTCCTTGGTTGAACTCTATGGTGATGACAGTGATGCCTTTGAATCTGACTTTGTGGCCGCTATGATCAAGATGGGCGACATTGAGTCGCTCACTGGATCACAAGGTGAAATTCGCAAAATTTGCAGCCGACCCAACTAA 942 46.5 MVVALAITLLAVFTGNSSAQLSPNFYYDSCPKLLSTVRAGIHSAVAQEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNNSVRGFNVIESIKKNVEKICPSVVSCADILTLSARDSVVVLGGPSWEVKLGRRDSKTASFSDVTGAIPPPTSNLDTLINRFNSKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNETNIDKSFAEERQRNCPTNGGDENRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYGDDSDAFESDFVAAMIKMGDIESLTGSQGEIRKICSRPN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33427945 33429237 - CcPI632755_02g020460.1 Cco02g2046 172803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2046 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cco02g2046 313 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 Gene3D Peroxidase, domain 2 158 292 - -
Cco02g2046 313 Pfam Peroxidase 37 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 SUPERFAMILY Heme-dependent peroxidases 20 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 Gene3D - 24 310 - -
Cco02g2046 313 CDD secretory_peroxidase 20 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2046 313 FunFam Peroxidase 158 292 - -
Cco02g2046 313 FunFam Peroxidase 24 166 - -
Cco02g2046 313 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 ProSiteProfiles Plant heme peroxidase family profile. 20 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2046 313 PANTHER PEROXIDASE 72-RELATED 8 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2044 Cco-Chr2:33418598 Cco02g2046 Cco-Chr2:33427945 1.40E-161 dispersed
Cco02g2046 Cco-Chr2:33427945 Cco11g0594 Cco-Chr11:6349590 8.00E-109 dispersed
Cco02g2045 Cco-Chr2:33423415 Cco02g2046 Cco-Chr2:33427945 2.60E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2046 K00430 - csv:101204245 578.556