Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2050 ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCATAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGATTGGAAGGTTCATTGCTTCAGATGGTCAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAAAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATCGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTAATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTCTCTCAGTTTTGGATTTGTAGAATACTCATTTCGACTTCTGAGGCCAAGTCATAGGTTCCAAGCTTTAAATATCCAGGAGCTTCACTGTAGAACAAGTAGAGAAGAAGTAAAGCTAATAATAGCTCCAATGGCATCCCTTGTCCCTGTTTTGCTATGTTTTATTGTTTTATCAGCTGCCCTAAGCCAAAGCCATGCACAGCTAACTCCAAACTTTTACAATAAAGTCTGCCCTAAGGCTTTGTCCACCATCAAATCCGTCGTCAAGAACGCCATTAGACGTGAGCCTCGAATGGGAGCTTCGCTCTTACGTCTCCATTTCCATGATTGCTTTGTCAATGGGTGTGACGGATCCGTCTTGTTGGATGATACTGCTACTTTCAAGGGAGAAAAGACTGCATTTCCTAATGTTAACTCGATTAGAGGATTTGAAGTTGTTGACAAGATTAAGACACAAGTGAATAAAGTTTGCAAAGGAAATGTCGTGTCTTGTGCTGACATTTTAGCCGTTGCTGCTCGTGACTCCGTTGCTATTCTCGGAGGGCCAAACTACAAAGTATTAGTAGGAAGAAGAGACGCAAGAAGAGTGAGTGGAGAAGATGCCAATAGAAATCTCCCTCCGCCATTTTTCAGCTTCACACAACTTCTATCCAACTTCCAATCTCATGGCCTCAACCTCAAGGACCTCGTCGTCTTGTCAGCCGGCCACACTCTCGGGTATGCTCGGTGCACCAATTTTCGAACTAGGATATACAACGACACCAACATCAACCCGAAATTCGCAGGGGTATTGAAGGGAAAGTGCCCACAGAGTGGGGGCGATGACAATCTGAAGGGGCTTGACATGACTCCAAATTTCTTTGACAATGCCTACTTCAAGGCTTTGTTGACAAACAATGGCCTTCTACATTCTGACCAGGAACTGTTCGGTGGCGGCAACAACGATAGCGATGCTTTGGTGAAGTATTATAGCAAATATCCAATTGCCTTTAGAAATGATTTTGGTTCTTCCATGATCAAAATGGGGAATATGAACCCACTTACAGGAAGTAATGGAGAAATCAGAGCCAATTGCAGGCTTGTCAATTGA 1512 45.04 MNSSSGPSRPDLPIAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNRGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDSLSFGFVEYSFRLLRPSHRFQALNIQELHCRTSREEVKLIIAPMASLVPVLLCFIVLSAALSQSHAQLTPNFYNKVCPKALSTIKSVVKNAIRREPRMGASLLRLHFHDCFVNGCDGSVLLDDTATFKGEKTAFPNVNSIRGFEVVDKIKTQVNKVCKGNVVSCADILAVAARDSVAILGGPNYKVLVGRRDARRVSGEDANRNLPPPFFSFTQLLSNFQSHGLNLKDLVVLSAGHTLGYARCTNFRTRIYNDTNINPKFAGVLKGKCPQSGGDDNLKGLDMTPNFFDNAYFKALLTNNGLLHSDQELFGGGNNDSDALVKYYSKYPIAFRNDFGSSMIKMGNMNPLTGSNGEIRANCRLVN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33449353 33457380 + CcPI632755_02g020500.1 Cco02g2050 172807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2050 503 Pfam Peroxidase 226 465 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 Gene3D Peroxidase, domain 2 347 482 - -
Cco02g2050 503 CDD secretory_peroxidase 208 502 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2050 503 ProSitePatterns Peroxidases active site signature. 240 251 IPR019794 GO:0004601(InterPro)
Cco02g2050 503 Gene3D - 212 500 - -
Cco02g2050 503 MobiDBLite consensus disorder prediction 1 29 - -
Cco02g2050 503 FunFam Peroxidase 347 482 - -
Cco02g2050 503 FunFam Peroxidase 212 351 - -
Cco02g2050 503 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 302 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 368 380 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 477 490 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 419 434 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 242 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 321 336 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 435 452 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Plant peroxidase signature 218 237 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 ProSiteProfiles Plant heme peroxidase family profile. 208 503 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 ProSitePatterns Peroxidases proximal heme-ligand signature. 369 379 IPR019793 -
Cco02g2050 503 PRINTS Haem peroxidase superfamily signature 321 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Haem peroxidase superfamily signature 369 384 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Haem peroxidase superfamily signature 303 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Haem peroxidase superfamily signature 240 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PRINTS Haem peroxidase superfamily signature 421 436 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 PANTHER PEROXIDASE 72-RELATED 195 501 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2050 503 Pfam GCN5-like protein 1 (GCN5L1) 42 141 - -
Cco02g2050 503 SUPERFAMILY Heme-dependent peroxidases 208 503 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2050 Cco-Chr2:33449353 Cco11g0594 Cco-Chr11:6349590 1.30E-92 dispersed
Cco02g2050 Cco-Chr2:33449353 Cco02g2051 Cco-Chr2:33462766 2.40E-163 tandem
Cco02g2050 Cco-Chr2:33449353 Cco04g1499 Cco-Chr4:30414089 2.20E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2050 K00430 - csv:101204979 558.14