Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2053 ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCTGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCGCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACTATCCCCCCTGGCATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCAGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCGACAGAACATCAAACAAGAACACAACAACTTTACTGAATTCTCATTTCCTCGTACTCATCACACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCACCAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCCGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAAGTATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGAATTCTTCAATCACGTTTGGGGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACGTATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGCAGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAAGAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTCGATGACATATTTATGGATTGTTATTAG 1353 45.45 MVMEFLFSSNSVEDPSGGPTFGHLRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHRQNIKQEHNNFTEFSFPRTHHTTRSSSSSMFQPSSPVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSLLSEALPATMAAEPKYSIASDSLTTPENSSITFGDDDDSHEADAKRWKSESEKEIMSPVGGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGSGNRRPSSEICSGKNGLWELTNMVWRSKEEAVDDIFMDCY 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33476042 33481288 + CcPI632755_02g020530.1 Cco02g2053 172810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2053 450 ProSiteProfiles WRKY domain profile. 319 384 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 396 419 - -
Cco02g2053 450 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 389 IPR044810 GO:0003700(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 217 241 - -
Cco02g2053 450 MobiDBLite consensus disorder prediction 109 143 - -
Cco02g2053 450 MobiDBLite consensus disorder prediction 83 102 - -
Cco02g2053 450 SMART WRKY_cls 324 383 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 SMART WRKY_cls 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 382 419 - -
Cco02g2053 450 Gene3D WRKY domain 309 385 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 Gene3D WRKY domain 155 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 FunFam WRKY transcription factor 57 310 384 - -
Cco02g2053 450 ProSiteProfiles WRKY domain profile. 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 261 275 - -
Cco02g2053 450 Pfam WRKY DNA -binding domain 169 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 Pfam WRKY DNA -binding domain 325 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 276 296 - -
Cco02g2053 450 SUPERFAMILY WRKY DNA-binding domain 316 384 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 83 101 - -
Cco02g2053 450 FunFam WRKY transcription factor 156 228 - -
Cco02g2053 450 SUPERFAMILY WRKY DNA-binding domain 168 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g2053 450 MobiDBLite consensus disorder prediction 260 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2053 Cco-Chr2:33476042 Cco03g0014 Cco-Chr3:167468 4.20E-79 dispersed
Cco02g2053 Cco-Chr2:33476042 Cco05g2663 Cco-Chr5:34686077 1.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58829 PF03106 WRKY 1.50E-22 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2053 K13424 - mdm:103447297 374.4