Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2053 | ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCTGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCGCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACTATCCCCCCTGGCATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCAGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCGACAGAACATCAAACAAGAACACAACAACTTTACTGAATTCTCATTTCCTCGTACTCATCACACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCACCAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCCGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAAGTATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGAATTCTTCAATCACGTTTGGGGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACGTATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGCAGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAAGAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTCGATGACATATTTATGGATTGTTATTAG | 1353 | 45.45 | MVMEFLFSSNSVEDPSGGPTFGHLRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHRQNIKQEHNNFTEFSFPRTHHTTRSSSSSMFQPSSPVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSLLSEALPATMAAEPKYSIASDSLTTPENSSITFGDDDDSHEADAKRWKSESEKEIMSPVGGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGSGNRRPSSEICSGKNGLWELTNMVWRSKEEAVDDIFMDCY | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33476042 | 33481288 | + | CcPI632755_02g020530.1 | Cco02g2053 | 172810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2053 | 450 | ProSiteProfiles | WRKY domain profile. | 319 | 384 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 396 | 419 | - | - | |
Cco02g2053 | 450 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 102 | 389 | IPR044810 | GO:0003700(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 217 | 241 | - | - | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 109 | 143 | - | - | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 83 | 102 | - | - | |
Cco02g2053 | 450 | SMART | WRKY_cls | 324 | 383 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | SMART | WRKY_cls | 168 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 382 | 419 | - | - | |
Cco02g2053 | 450 | Gene3D | WRKY domain | 309 | 385 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | Gene3D | WRKY domain | 155 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | FunFam | WRKY transcription factor 57 | 310 | 384 | - | - | |
Cco02g2053 | 450 | ProSiteProfiles | WRKY domain profile. | 169 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 261 | 275 | - | - | |
Cco02g2053 | 450 | Pfam | WRKY DNA -binding domain | 169 | 225 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | Pfam | WRKY DNA -binding domain | 325 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 276 | 296 | - | - | |
Cco02g2053 | 450 | SUPERFAMILY | WRKY DNA-binding domain | 316 | 384 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 83 | 101 | - | - | |
Cco02g2053 | 450 | FunFam | WRKY transcription factor | 156 | 228 | - | - | |
Cco02g2053 | 450 | SUPERFAMILY | WRKY DNA-binding domain | 168 | 227 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g2053 | 450 | MobiDBLite | consensus disorder prediction | 260 | 304 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2053 | Cco-Chr2:33476042 | Cco03g0014 | Cco-Chr3:167468 | 4.20E-79 | dispersed | |
Cco02g2053 | Cco-Chr2:33476042 | Cco05g2663 | Cco-Chr5:34686077 | 1.40E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58829 | PF03106 | WRKY | 1.50E-22 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2053 | K13424 | - | mdm:103447297 | 374.4 |