Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2063 ATGGCTACCGAGGCGACCGAAGCCACGACCAAGTTCCAGAGTCCGGATTTTCGTCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTATGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCAGGGTCTGTTGAGCATATGGGTATGTTTCCGGTTGATACTGTCAAGACCCATATGCAAGCCCTTGGTTCATGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTAGGTCAATTTTGAAATCAGAGGGACCGGCTGGGTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCTGCGCATGCTGTATATTTTACTGTCTACGAGAATTGTAAGAAGTTTTTCTCCGGTGGGGATCCTAATAATTCTATTGCTCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCCAGTGACGCTGTGTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAATTCCTACAAGGGAGTTTTGGATTGTATCAAAAGGGTCCTTAGAGAGGAGGGTGTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTGATGAATGCTCCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGTAAACGATGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGCGGGTCAATCAGGGATGTAATTCGGACAATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGGTGGGTTCCAAGGATGCTCTTTCATGCTCCGGCTGCAGCTATATGCTGGTCGACATATGAAGCGTTAAAGTCTTTCTTCCACGAGCTCAATGGCAGTGGCAGCGACAACTTGACATGA 996 47.39 MATEATEATTKFQSPDFRPVPSPPDFHPEIMVSAHDGLRFWQFMIAGSIAGSVEHMGMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSIAHAASGVCATVASDAVFTPMDMVKQRLQLSNNSYKGVLDCIKRVLREEGVKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVIRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHELNGSGSDNLT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33574216 33577559 - CcPI632755_02g020630.1 Cco02g2063 172820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2063 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Cco02g2063 331 Gene3D Mitochondrial carrier domain 167 331 IPR023395 -
Cco02g2063 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cco02g2063 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Cco02g2063 331 PANTHER MITOFERRIN-1-RELATED 33 321 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Cco02g2063 331 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Cco02g2063 331 Pfam Mitochondrial carrier protein 38 128 IPR018108 -
Cco02g2063 331 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
Cco02g2063 331 Gene3D Mitochondrial carrier domain 24 166 IPR023395 -
Cco02g2063 331 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Cco02g2063 331 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
Cco02g2063 331 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Cco02g2063 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Cco02g2063 331 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Cco02g2063 331 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Cco02g2063 331 FunFam Mitochondrial RNA-splicing protein MRS3 167 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2063 Cco-Chr2:33574216 Cco04g0860 Cco-Chr4:24188982 1.00E-122 dispersed
Cco02g2063 Cco-Chr2:33574216 Cco08g0871 Cco-Chr8:20555207 2.20E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2063 K15113 - csv:101215924 637.876