Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2066 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCGCCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCACAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCAAGAATGCGAGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCTCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGTGACTCCAACAACATTTCCGACGACGACCCACACGGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 483 45.13 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTFPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33588911 33589726 + CcPI632755_02g020660.1 Cco02g2066 172823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2066 160 Coils Coil 86 106 - -
Cco02g2066 160 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cco02g2066 160 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cco02g2066 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2066 Cco-Chr2:33588911 Cco09g2460 Cco-Chr9:38769630 4.90E-38 dispersed
Cco08g1372 Cco-Chr8:25633347 Cco02g2066 Cco-Chr2:33588911 2.20E-06 dispersed
Cco02g2066 Cco-Chr2:33588911 Cco07g0478 Cco-Chr7:5715761 1.60E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58830 PF03195 LOB 1.60E-40 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2066 - - - 0.0