Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2066 | ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCGCCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCACAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCAAGAATGCGAGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCTCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGTGACTCCAACAACATTTCCGACGACGACCCACACGGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA | 483 | 45.13 | MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQVTPTTFPTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33588911 | 33589726 | + | CcPI632755_02g020660.1 | Cco02g2066 | 172823 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2066 | 160 | Coils | Coil | 86 | 106 | - | - | |
Cco02g2066 | 160 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Cco02g2066 | 160 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cco02g2066 | 160 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 6 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2066 | Cco-Chr2:33588911 | Cco09g2460 | Cco-Chr9:38769630 | 4.90E-38 | dispersed | |
Cco08g1372 | Cco-Chr8:25633347 | Cco02g2066 | Cco-Chr2:33588911 | 2.20E-06 | dispersed | |
Cco02g2066 | Cco-Chr2:33588911 | Cco07g0478 | Cco-Chr7:5715761 | 1.60E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58830 | PF03195 | LOB | 1.60E-40 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2066 | - | - | - | 0.0 |