Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2086 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGTGATGGACGACAGATTTAGACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTTATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTCGGTTCAAAAAAGATGGGATATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTTGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACTCTCCATTGTGCTGTTGCTGGGGGTTCTGCTGTTGCGGATCAGGTTGTCAAACTCTTGATTGATGCTTCCGCTGATGTGAGTGCTGTTGATGCAAACGGTAATCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCTATTCAAGGAAAAAAGTTTTACAACAATTACTAAATGGTCGTGAAGAAGCCCTTGGTTCATCCGAGTCAATATTTTACGAGAGAGAAACACAGGAGCCATTGGAGCTATCACCCCCTCGGGCTTCAAGAGATGGGACAGAGAAGAAAGAGTATCCGGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTCCCATGTCCAGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAAGATGAAACTGGATGCACCCGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAAGAACTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCAATCTGTGGTTCTTCACTCGACATTGCATCGATCAGCGCACTTACCCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCACCTTTAACCCCTTCTGGAGTTTCCTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATATGGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGGCTAAAGACTTCTTTGAACGCAAGAGACATAGATATAGATGTTGAGTTACTCGGTCTCGAAAGTCAGCGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTCCATCTTTTCCATCCCCGAGGAGTAGAAATGGAGAACTTAATGGACTTGGAGGCATGAACCCTAATAACCTTGAGGACCTTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGGATTCGGATGCGCCAAAGCTTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGATCATCTCAACTATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTCGCCAAGCGTAGCCAGAGCTTTATCGAGCGTAGTGTAGTGAACTGTCATTCTGGACTTTCGCCCCCAGCTACATCCACAACTGCCATGCCTTTGAGCCTGTCTGATTGGGGTTCGCCGGATGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTCCGAAACAGTTGCACCAGCACTCTCGCCACGTCCACAATGCACGCTGCCACTCTCGAGCCAGACGTGTCGTGGGTTCAGTCCCTGGTGAAGGATGGTCCATCCGAAAATGCTGTGCAGCTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCAAAGCGAAGGTACATGGAACAGGAGCAGTTAGTTGCTTGA 2082 47.07 MMCNGCNRKSASPNFVMDDRFRRGGLGFCISVLLEFSATDDLIGFRSAVEEDGYNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLIDASADVSAVDANGNRPGDLIAPDFTSASYSRKKVLQQLLNGREEALGSSESIFYERETQEPLELSPPRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISALTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNMAPPTLQLPGSRLKTSLNARDIDIDVELLGLESQRRRQQQLMDEMSCLPSPTRWNNGLPTPPSFPSPRSRNGELNGLGGMNPNNLEDLFGSVDPAILPQLQGLSLDSVGSQVQSPSGIRMRQSLNQSFLSSYANSIGSPPARSSQLSVSTAASVLSSRAAAFAKRSQSFIERSVVNCHSGLSPPATSTTAMPLSLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSTLATSTMHAATLEPDVSWVQSLVKDGPSENAVQLSMDEQQQQQLCHLDNGDSKRRYMEQEQLVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33755065 33757146 - CcPI632755_02g020860.1 Cco02g2086 172843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2086 693 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515(InterPro)
Cco02g2086 693 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Cco02g2086 693 PANTHER UNKEMPT FAMILY MEMBER 72 654 IPR045234 -
Cco02g2086 693 Pfam Ankyrin repeats (3 copies) 75 143 IPR002110 GO:0005515(InterPro)
Cco02g2086 693 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Cco02g2086 693 Gene3D - 272 334 - -
Cco02g2086 693 SMART ANK_2a 75 105 IPR002110 GO:0005515(InterPro)
Cco02g2086 693 SMART ANK_2a 110 142 IPR002110 GO:0005515(InterPro)
Cco02g2086 693 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Cco02g2086 693 SMART c3hfinal6 271 297 IPR000571 GO:0046872(InterPro)
Cco02g2086 693 SMART c3hfinal6 306 329 IPR000571 GO:0046872(InterPro)
Cco02g2086 693 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872(InterPro)
Cco02g2086 693 Gene3D - 53 176 IPR036770 -
Cco02g2086 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 296 IPR000571 GO:0046872(InterPro)
Cco02g2086 693 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2086 Cco-Chr2:33755065 Cco03g1644 Cco-Chr3:31120749 2.20E-50 dispersed
Cco10g1225 Cco-Chr10:24962894 Cco02g2086 Cco-Chr2:33755065 1.90E-131 transposed
Cco10g1692 Cco-Chr10:30465501 Cco02g2086 Cco-Chr2:33755065 2.70E-131 transposed
Cco02g2086 Cco-Chr2:33755065 Cco07g0446 Cco-Chr7:5218054 1.30E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58834 PF12796 Ank_2 2.10E-06 CL0465 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2086 - - - 0.0