Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2103 ATGGCGCCAATTCCCAGATCTCTCTCCCACAAATTCTTTTTCCTTTTACTCCTCATTCTCCACGTCGGCTGCTTCCTTCTTACCACCGCCGACCACCGTCGCCGCCGCCAACACCGTCCTACTCCCTCCTGTTTGAAGCCACACAAACTCAAATCCCTAGCTTCCTCTTTTTCATTTCTCAAACGAATCTTCTCTTCCAAGACTTGCAAAATGGCAATCGAAACCGCTCGCTCGCCTTCCACTCCCGCTAGGTCATCGCAGCACTCCATCGTCACGCTCATCCAACAGGAGATTCCTCCTCCGCCGATTCCGGAGACTCATCCTCCAACCGGAACGCCGCAGGATTCAGATATCACTACGGCAGAGCCGAATCAATCTTTTCCTCTTCGAAACGATATCTTCCCCTGTACTGCTTGTGGCGAGATTTTTCCCAAAGCGCAACTCCTCGAACAGCATCAATCGATTAAACACGCTGTGTCGGAGCTTGCTGATTCGGATTCTGGAAAGAATATTGTTCGGATTATTTTCGAAACTGGATGGACGAGTAGAGAAAAAAGCCCTAAGATCCTTCGAATCTTGAAAATCCACAATAGTCAGAAGATTCTTTCCAGATTTGAAGAGTATAGAGAGACGGTGAAGGCGAAAGCGGCTATACACGGCGGCGTAAAGCGGCGGGATGAGCGTTGCATTGCCGACGGGAACGAGCTTCTGAGGTTTCATTGTTCGACGTTTTTGTGCGATTTGGGGCAAAATGGTAATTCCAGTATTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCGGGATTCTCACACAAGTTGGATGGAATTTCGACGCTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAATGCGAAGCGGGCGATTTTGGTTTGTCGGGTTGTGGCGGGTCGGGTCGGCTCAGACGCCGATGAGCCGGAAAAAGACGGCGGAGGGTTTGACTCTGTCGTTGGGAGGAGTGGGAGTGGGGCCCAGACCACGTTGGATGAAGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTATACGAAATCTAA 1116 50.36 MAPIPRSLSHKFFFLLLLILHVGCFLLTTADHRRRRQHRPTPSCLKPHKLKSLASSFSFLKRIFSSKTCKMAIETARSPSTPARSSQHSIVTLIQQEIPPPPIPETHPPTGTPQDSDITTAEPNQSFPLRNDIFPCTACGEIFPKAQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRETVKAKAAIHGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNAKRAILVCRVVAGRVGSDADEPEKDGGGFDSVVGRSGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33898644 33899759 - CcPI632755_02g021030.1 Cco02g2103 172860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2103 371 Gene3D - 158 370 - -
Cco02g2103 371 MobiDBLite consensus disorder prediction 110 124 - -
Cco02g2103 371 SUPERFAMILY ADP-ribosylation 160 370 - -
Cco02g2103 371 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 58 369 - -
Cco02g2103 371 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Cco02g2103 371 MobiDBLite consensus disorder prediction 98 124 - -
Cco02g2103 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0407 Cco-Chr1:4060451 Cco02g2103 Cco-Chr2:33898644 1.70E-28 dispersed
Cco02g2103 Cco-Chr2:33898644 Cco05g2076 Cco-Chr5:29744977 4.30E-53 dispersed
Cco02g2103 Cco-Chr2:33898644 Cco10g0588 Cco-Chr10:7785120 1.80E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58835 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2103 - - - 0.0