Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2141 ATGCCTTATCGTCATTCTCAATCAGTCTGTTTCCAGGAAAGAACTGGAAATCATAATTTCAACTTTATAAACCTAATAACTCACCGCCTGATTCACCCCTTTCTCCATCGCTTGCTTTTCCCCTGTTTCTACCTCAGCTTCATTCTTGGATTCTGTTACTATTTGGAGGCTTACATAACTATGGATCACCCAAATCTTAACGATTTCCCAGTTTGTGGAATTGATTATCAAACCCTTTTAACCCAATTTCACGATCAAAATTCTTTACCCACTTCATACCTATACCCAGAATTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGACCCCAACAGTTCTTCAGCGGCGGAGTTGAAATTAAGCGAAGGTGTGGGTTCTTCAGGGCGAAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAAGAGAAGCCTTGTATGTTTTATGATCCCTTGGGCCTTGAAGTTACCGAGAAATCATTCTATGATGCTCTTGTTAAGAATTACCCTCCTTCGCCTAACCAACCTCCCCTCTTGGATTGTGACAGTGATCTTGCTAGTACTACTCTTAGTGTTCCCAATACCAATTCACCTGACTCCCAATGGGTTGTTGATCCTGGAGAACATAAATCCTCTGTACTTCCAAACCCTGTTCTTAGTAGTCATGAGCTTGTCAATGAGTTGTTGGCTCATAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAGGGGTTGGAGGAGGCAAGTAAGTTTCTTCCAGTGGGTACCCAGTTGAATATTGATCTTGGCAGTAGCATGGTACCAGGAGTAGTTTCTAAGACGGAGAATTCGCCGAATGGATCGAAGCGAAGGAAGAGTCGTGAACGTGAAGATGTGGACTTGGATTCAGAAGAAGGGAGGAGAAACAAGCATTCAACCATTTCTGTGGATGAGGAAGAATTATCCGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTACTGCAAATGGTGGGCGTGAAAATTTGCAGTATAACGGTCAACTTCATGGATCGATTACTTCAAAAGCTCGGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGCGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCGTATGAACTGCTTAAGCAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTTTCAAAGAATGGCTCATTTCTTTGCCAATGCTCTTGAGGCTCGTATGGTTGGGACTGGCACAGGAAGTAGAATCTACTATGAATCATTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGCTCACTTATCATCCTGCCCTTTTAAGAAGCTCTCACTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCTTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACCGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATCGTCGAGTCAGGCCGTCGTTTGGAAAAATACTGTGAGCGGTTTAATGTTCCTTTTCAATATCAAGCCATACCATCAAATAACTGGGAAACTATCCGTGTTGAGGACTTAAAGCTCGATAGCAATGACGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTTCGTTTAATAAGGAAGATGAATCCAAACATCTTTATACATTCTGTGGTTAATGGATCCTACCATGCGCCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCATTTCTCTGCATTATATGATGCTCTAGACGTTAATTTACCTCGTGACAGTGATGAGAGGATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAACGTCGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTAGATGTATGAGGGCAGGTTTCAAGCAACTTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAACTAACATCCTATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGTTGGATGCTTCAAGGATGGAAAGGCCGGATCGTCTATGCTTCTTGTTGCTGGGTACCAGCATAG 2316 41.54 MPYRHSQSVCFQERTGNHNFNFINLITHRLIHPFLHRLLFPCFYLSFILGFCYYLEAYITMDHPNLNDFPVCGIDYQTLLTQFHDQNSLPTSYLYPEFENSFVFNNPSPDLVPFVDPNSSSAAELKLSEGVGSSGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALVKNYPPSPNQPPLLDCDSDLASTTLSVPNTNSPDSQWVVDPGEHKSSVLPNPVLSSHELVNELLAHNIFSDSTSILQYQKGLEEASKFLPVGTQLNIDLGSSMVPGVVSKTENSPNGSKRRKSREREDVDLDSEEGRRNKHSTISVDEEELSEMFDKVLLHDCGNETTANGGRENLQYNGQLHGSITSKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGFRPAEKIVESGRRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFIHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34191314 34193629 - CcPI632755_02g021410.1 Cco02g2141 172898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2141 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 378 768 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco02g2141 771 MobiDBLite consensus disorder prediction 305 333 - -
Cco02g2141 771 MobiDBLite consensus disorder prediction 294 333 - -
Cco02g2141 771 Pfam GRAS domain family 394 768 IPR005202 -
Cco02g2141 771 ProSiteProfiles GRAS family profile. 385 769 IPR005202 -
Cco02g2141 771 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2141 Cco-Chr2:34191314 Cco09g0972 Cco-Chr9:9199729 8.60E-56 dispersed
Cco01g0663 Cco-Chr1:6788263 Cco02g2141 Cco-Chr2:34191314 8.00E-46 transposed
Cco05g1320 Cco-Chr5:13769902 Cco02g2141 Cco-Chr2:34191314 1.90E-44 transposed
Cco10g2105 Cco-Chr10:34362288 Cco02g2141 Cco-Chr2:34191314 8.60E-157 wgd
Cco02g2141 Cco-Chr2:34191314 Cco03g0141 Cco-Chr3:1373861 1.30E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58838 PF03514 GRAS 2.90E-104 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2141 K27753 - csv:101203568 1172.15