Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2141 ATGCCTTATCGTCATTCTCAATCAGTCTGTTTCCAGGAAAGAACTGGAAATCATAATTTCAACTTTATAAACCTAATAACTCACCGCCTGATTCACCCCTTTCTCCATCGCTTGCTTTTCCCCTGTTTCTACCTCAGCTTCATTCTTGGATTCTGTTACTATTTGGAGGCTTACATAACTATGGATCACCCAAATCTTAACGATTTCCCAGTTTGTGGAATTGATTATCAAACCCTTTTAACCCAATTTCACGATCAAAATTCTTTACCCACTTCATACCTATACCCAGAATTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGACCCCAACAGTTCTTCAGCGGCGGAGTTGAAATTAAGCGAAGGTGTGGGTTCTTCAGGGCGAAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAAGAGAAGCCTTGTATGTTTTATGATCCCTTGGGCCTTGAAGTTACCGAGAAATCATTCTATGATGCTCTTGTTAAGAATTACCCTCCTTCGCCTAACCAACCTCCCCTCTTGGATTGTGACAGTGATCTTGCTAGTACTACTCTTAGTGTTCCCAATACCAATTCACCTGACTCCCAATGGGTTGTTGATCCTGGAGAACATAAATCCTCTGTACTTCCAAACCCTGTTCTTAGTAGTCATGAGCTTGTCAATGAGTTGTTGGCTCATAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAGGGGTTGGAGGAGGCAAGTAAGTTTCTTCCAGTGGGTACCCAGTTGAATATTGATCTTGGCAGTAGCATGGTACCAGGAGTAGTTTCTAAGACGGAGAATTCGCCGAATGGATCGAAGCGAAGGAAGAGTCGTGAACGTGAAGATGTGGACTTGGATTCAGAAGAAGGGAGGAGAAACAAGCATTCAACCATTTCTGTGGATGAGGAAGAATTATCCGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTACTGCAAATGGTGGGCGTGAAAATTTGCAGTATAACGGTCAACTTCATGGATCGATTACTTCAAAAGCTCGGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGCGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCGTATGAACTGCTTAAGCAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTTTCAAAGAATGGCTCATTTCTTTGCCAATGCTCTTGAGGCTCGTATGGTTGGGACTGGCACAGGAAGTAGAATCTACTATGAATCATTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGCTCACTTATCATCCTGCCCTTTTAAGAAGCTCTCACTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCTTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACCGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATCGTCGAGTCAGGCCGTCGTTTGGAAAAATACTGTGAGCGGTTTAATGTTCCTTTTCAATATCAAGCCATACCATCAAATAACTGGGAAACTATCCGTGTTGAGGACTTAAAGCTCGATAGCAATGACGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTTCGTTTAATAAGGAAGATGAATCCAAACATCTTTATACATTCTGTGGTTAATGGATCCTACCATGCGCCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCATTTCTCTGCATTATATGATGCTCTAGACGTTAATTTACCTCGTGACAGTGATGAGAGGATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAACGTCGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTAGATGTATGAGGGCAGGTTTCAAGCAACTTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAACTAACATCCTATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGTTGGATGCTTCAAGGATGGAAAGGCCGGATCGTCTATGCTTCTTGTTGCTGGGTACCAGCATAG 2316 41.54 MPYRHSQSVCFQERTGNHNFNFINLITHRLIHPFLHRLLFPCFYLSFILGFCYYLEAYITMDHPNLNDFPVCGIDYQTLLTQFHDQNSLPTSYLYPEFENSFVFNNPSPDLVPFVDPNSSSAAELKLSEGVGSSGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALVKNYPPSPNQPPLLDCDSDLASTTLSVPNTNSPDSQWVVDPGEHKSSVLPNPVLSSHELVNELLAHNIFSDSTSILQYQKGLEEASKFLPVGTQLNIDLGSSMVPGVVSKTENSPNGSKRRKSREREDVDLDSEEGRRNKHSTISVDEEELSEMFDKVLLHDCGNETTANGGRENLQYNGQLHGSITSKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGFRPAEKIVESGRRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFIHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34191314 34193629 - CcPI632755_02g021410.1 Cco02g2141 172898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2141 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 378 768 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco02g2141 771 MobiDBLite consensus disorder prediction 305 333 - -
Cco02g2141 771 MobiDBLite consensus disorder prediction 294 333 - -
Cco02g2141 771 Pfam GRAS domain family 394 768 IPR005202 -
Cco02g2141 771 ProSiteProfiles GRAS family profile. 385 769 IPR005202 -
Cco02g2141 771 MobiDBLite consensus disorder prediction 127 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2141 K27753 - - csv:101203568 1172.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2141 Cco-Chr2:34191314 Cco09g0972 Cco-Chr9:9199729 8.60E-56 dispersed
Cco01g0663 Cco-Chr1:6788263 Cco02g2141 Cco-Chr2:34191314 8.00E-46 transposed
Cco05g1320 Cco-Chr5:13769902 Cco02g2141 Cco-Chr2:34191314 1.90E-44 transposed
Cco10g2105 Cco-Chr10:34362288 Cco02g2141 Cco-Chr2:34191314 8.60E-157 wgd
Cco02g2141 Cco-Chr2:34191314 Cco03g0141 Cco-Chr3:1373861 1.30E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g472 . . . . . . Bma14g00513 . . . . . . . . . . . . . . . . . Cla02g01955 Cam02g2074 Cec02g2110 Cco02g2141 Clacu02g2060 Cmu02g1999 Cre02g2309 Cone1ag0629 . . . . . . . Blo13g01071 . Bda07g00579 . . Bpe11g00754 . . Sed01g0841 . . . . . . . . Bhi10g00730 Tan05g0414 Cmetu11g2076 . Hepe10g1249 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g2105 . 74 740 GRAS Transcription Factor Family AT2G37650 55.0 2.8e-194 675.6
Cco03g0141 . 382 764 GRAS Transcription Factor Family AT3G46600 56.9 3.9e-127 452.2
Cco04g1500 . 50 468 GRAS Transcription Factor Family AT3G49950 60.4 3.4e-136 481.9
Cco07g1164 . 36 443 GRAS Transcription Factor Family AT5G41920 66.1 8.6e-148 520.4
Cco04g0775 . 543 936 GRAS Transcription Factor Family AT5G41920 55.4 1.5e-115 413.3
Cco07g0988 . 8 553 GRAS Transcription Factor Family AT5G66770 58.6 7.8e-166 580.9
Cco04g1706 . 1 569 GRAS Transcription Factor Family AT5G66770 54.6 1.2e-150 530.4
Cco10g0442 . 49 544 GRAS Transcription Factor Family AT1G50600 58.6 5.2e-161 564.7
Cco02g1039 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 1.2e-149 526.9
Cco04g1920 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 8.3e-143 504.2
Cco09g0972 . 190 570 GRAS Transcription Factor Family AT1G50600 50.1 1.9e-107 386.7
Cco10g0378 . 1 634 GRAS Transcription Factor Family AT1G63100 50.9 1.1e-165 580.5
Cco01g0663 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.2e-205 713.0
Cco03g0873 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 2.0e-184 642.5
Cco05g1320 . 32 556 GRAS Transcription Factor Family AT1G14920 56.6 1.6e-157 553.1
Cco10g0360 . 34 398 GRAS Transcription Factor Family AT1G55580 52.3 1.5e-105 380.2
Cco03g0873 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 3.8e-177 618.2
Cco01g0663 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cco05g1320 . 1 557 GRAS Transcription Factor Family AT1G66350 55.9 5.9e-162 567.8
Cco02g2141 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 1.2e-141 500.4
Cco02g1039 . 19 518 GRAS Transcription Factor Family AT5G48150 64.2 2.8e-177 618.6
Cco10g0442 . 40 544 GRAS Transcription Factor Family AT5G48150 60.6 5.5e-173 604.4
Cco04g1920 . 16 548 GRAS Transcription Factor Family AT5G48150 51.8 1.3e-150 530.0
Cco01g0663 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.6e-211 732.6
Cco03g0873 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 5.0e-189 657.9
Cco05g1320 . 31 556 GRAS Transcription Factor Family AT2G01570 58.4 1.8e-162 569.7
Cco03g0873 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 3.8e-177 618.2
Cco01g0663 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cco05g1320 . 1 557 GRAS Transcription Factor Family AT1G66350 55.9 5.9e-162 567.8
Cco03g0873 . 48 594 GRAS Transcription Factor Family AT3G03450 62.4 6.3e-178 620.9
Cco01g0663 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.6e-171 599.0
Cco05g1320 . 31 556 GRAS Transcription Factor Family AT3G03450 58.6 2.0e-160 562.8
Cco03g0873 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.4e-158 555.8
Cco01g0663 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.5e-155 545.8
Cco05g1320 . 28 556 GRAS Transcription Factor Family AT5G17490 52.8 1.2e-138 490.3
Cco09g0972 . 1 570 GRAS Transcription Factor Family AT1G21450 57.1 6.7e-173 604.4
Cco10g0442 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 4.8e-115 412.1
Cco03g0141 . 390 764 GRAS Transcription Factor Family AT5G59450 57.0 6.1e-129 458.4
Cco04g1920 . 1 548 GRAS Transcription Factor Family AT4G17230 58.3 2.8e-175 612.1
Cco02g1039 . 1 519 GRAS Transcription Factor Family AT4G17230 50.4 7.6e-136 481.1
Cco10g0442 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 8.4e-135 477.6
Cco02g1039 . 134 518 GRAS Transcription Factor Family AT2G04890 65.8 4.8e-146 514.6
Cco10g0442 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 4.2e-142 501.5
Cco04g1920 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.8e-125 445.7
Cco03g1331 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 7.3e-178 620.5
Cco05g2342 . 49 485 GRAS Transcription Factor Family AT1G50420 60.1 2.6e-143 505.8
Cco06g0311 . 378 743 GRAS Transcription Factor Family AT4G00150 59.9 2.5e-121 433.0
Cco10g0272 . 413 776 GRAS Transcription Factor Family AT4G00150 55.2 2.8e-104 376.3
Cco07g0988 . 9 553 GRAS Transcription Factor Family AT3G50650 52.9 1.7e-143 506.5
Cco04g0775 . 334 934 GRAS Transcription Factor Family AT3G54220 63.8 3.6e-204 708.4
Cco07g1164 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 7.9e-135 478.0
Cco04g1511 . 106 495 GRAS Transcription Factor Family AT4G37650 67.7 1.7e-156 549.7
Cco02g1360 . 106 496 GRAS Transcription Factor Family AT4G37650 55.9 7.4e-123 438.0
Cco06g0100 . 63 455 GRAS Transcription Factor Family AT4G37650 50.1 5.0e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006222 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 2 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58838 PF03514 GRAS 2.90E-104 CL0063 Cco TF