Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2145 ATGGCCACTATCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTAGATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 52.9 MATIISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34230991 34232687 + CcPI632755_02g021450.1 Cco02g2145 172902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2145 258 CDD DPBB_EXPA_N 31 159 - -
Cco02g2145 258 Gene3D - 164 256 IPR036749 -
Cco02g2145 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cco02g2145 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cco02g2145 258 Gene3D - 20 160 IPR036908 -
Cco02g2145 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cco02g2145 258 FunFam Expansin 21 160 - -
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cco02g2145 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cco02g2145 258 PANTHER EXPANSIN-A15 13 256 IPR002963 GO:0009664(InterPro)
Cco02g2145 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cco02g2145 258 FunFam Expansin 164 256 - -
Cco02g2145 258 SMART dpbb_1 67 154 IPR007112 -
Cco02g2145 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0893 Cco-Chr1:9852810 Cco02g2145 Cco-Chr2:34230991 3.00E-72 dispersed
Cco02g0342 Cco-Chr2:3135073 Cco02g2145 Cco-Chr2:34230991 2.30E-73 dispersed
Cco02g2145 Cco-Chr2:34230991 Cco05g2686 Cco-Chr5:34845054 7.00E-103 dispersed
Cco02g2145 Cco-Chr2:34230991 Cco03g0148 Cco-Chr3:1469472 9.70E-137 wgd
Cco02g2145 Cco-Chr2:34230991 Cco04g1004 Cco-Chr4:25639013 3.30E-137 wgd
Cco02g2145 Cco-Chr2:34230991 Cco07g0335 Cco-Chr7:3494809 2.40E-135 wgd
Cco02g2145 Cco-Chr2:34230991 Cco09g2168 Cco-Chr9:36068482 2.50E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2145 - - - 0.0