Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2163 | ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCTGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGACTCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGAAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACCGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTGCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCCGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTTTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCAGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCGCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACGTCGAAAGCTGA | 1980 | 45.1 | MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILTQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRCGSSQPSESMTPAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELRVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNVES | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34366997 | 34370631 | + | CcPI632755_02g021630.1 | Cco02g2163 | 172920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2163 | 659 | Gene3D | - | 343 | 654 | IPR011989 | - | |
Cco02g2163 | 659 | FunFam | RING-type E3 ubiquitin transferase | 337 | 632 | - | - | |
Cco02g2163 | 659 | CDD | MLKL_NTD | 31 | 139 | - | - | |
Cco02g2163 | 659 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco02g2163 | 659 | SMART | arm_5 | 423 | 463 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SMART | arm_5 | 505 | 545 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SMART | arm_5 | 464 | 504 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SMART | arm_5 | 546 | 586 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SMART | arm_5 | 382 | 422 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco02g2163 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 382 | 421 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 546 | 585 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 465 | 503 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | Gene3D | - | 9 | 119 | IPR036537 | GO:0007166(InterPro) | |
Cco02g2163 | 659 | SUPERFAMILY | RING/U-box | 252 | 332 | - | - | |
Cco02g2163 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 393 | 431 | IPR000225 | GO:0005515(InterPro) | |
Cco02g2163 | 659 | SUPERFAMILY | ARM repeat | 354 | 626 | IPR016024 | - | |
Cco02g2163 | 659 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 29 | 151 | IPR054000 | - | |
Cco02g2163 | 659 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco02g2163 | 659 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 627 | - | - | |
Cco02g2163 | 659 | MobiDBLite | consensus disorder prediction | 640 | 659 | - | - | |
Cco02g2163 | 659 | FunFam | RING-type E3 ubiquitin transferase | 257 | 331 | - | - | |
Cco02g2163 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
Cco02g2163 | 659 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Cco02g2163 | 659 | FunFam | RING-type E3 ubiquitin transferase | 7 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1448 | Cco-Chr1:26233303 | Cco02g2163 | Cco-Chr2:34366997 | 1.60E-49 | dispersed | |
Cco02g2163 | Cco-Chr2:34366997 | Cco07g0680 | Cco-Chr7:11764052 | 8.80E-09 | dispersed | |
Cco02g1080 | Cco-Chr2:14726512 | Cco02g2163 | Cco-Chr2:34366997 | 7.90E-87 | transposed | |
Cco04g1925 | Cco-Chr4:33650683 | Cco02g2163 | Cco-Chr2:34366997 | 4.40E-15 | transposed | |
Cco05g2381 | Cco-Chr5:32309586 | Cco02g2163 | Cco-Chr2:34366997 | 1.10E-120 | transposed | |
Cco07g0211 | Cco-Chr7:2148288 | Cco02g2163 | Cco-Chr2:34366997 | 4.30E-37 | transposed | |
Cco07g0914 | Cco-Chr7:21112444 | Cco02g2163 | Cco-Chr2:34366997 | 2.00E-25 | transposed | |
Cco02g2163 | Cco-Chr2:34366997 | Cco03g0164 | Cco-Chr3:1593850 | 5.00E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2163 | K27628 | - | csv:101221150 | 1141.72 |