Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2163 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCTGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGACTCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGAAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACCGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTGCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCCGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTTTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCAGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCGCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACGTCGAAAGCTGA 1980 45.1 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILTQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRCGSSQPSESMTPAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELRVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNVES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34366997 34370631 + CcPI632755_02g021630.1 Cco02g2163 172920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2163 659 Gene3D - 343 654 IPR011989 -
Cco02g2163 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cco02g2163 659 CDD MLKL_NTD 31 139 - -
Cco02g2163 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g2163 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g2163 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Cco02g2163 659 SUPERFAMILY RING/U-box 252 332 - -
Cco02g2163 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cco02g2163 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cco02g2163 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cco02g2163 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g2163 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cco02g2163 659 MobiDBLite consensus disorder prediction 640 659 - -
Cco02g2163 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cco02g2163 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cco02g2163 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cco02g2163 659 FunFam RING-type E3 ubiquitin transferase 7 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1448 Cco-Chr1:26233303 Cco02g2163 Cco-Chr2:34366997 1.60E-49 dispersed
Cco02g2163 Cco-Chr2:34366997 Cco07g0680 Cco-Chr7:11764052 8.80E-09 dispersed
Cco02g1080 Cco-Chr2:14726512 Cco02g2163 Cco-Chr2:34366997 7.90E-87 transposed
Cco04g1925 Cco-Chr4:33650683 Cco02g2163 Cco-Chr2:34366997 4.40E-15 transposed
Cco05g2381 Cco-Chr5:32309586 Cco02g2163 Cco-Chr2:34366997 1.10E-120 transposed
Cco07g0211 Cco-Chr7:2148288 Cco02g2163 Cco-Chr2:34366997 4.30E-37 transposed
Cco07g0914 Cco-Chr7:21112444 Cco02g2163 Cco-Chr2:34366997 2.00E-25 transposed
Cco02g2163 Cco-Chr2:34366997 Cco03g0164 Cco-Chr3:1593850 5.00E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2163 K27628 - csv:101221150 1141.72