Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2164 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCTTCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCTGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCCGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAGGCCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCATCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGACGCCAGAGAATACGACGTCGAATGGCAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCAACAACAACCGCCGCAGCATACACACAAATTGAAGTCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAATTGTCATCAACAAATGCAAAATCTGACACCCTTTTCAAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1005 45.17 MAHSSLPIFLDPPNWLQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSADAREYDVEWQQQQPFIVAGLESPTTATTTAAAYTQIEVNNNNFVANSLQQAAGLVQYNNNCHQQMQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34377155 34378921 - CcPI632755_02g021640.1 Cco02g2164 172921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2164 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 267 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2164 334 MobiDBLite consensus disorder prediction 138 174 - -
Cco02g2164 334 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco02g2164 334 MobiDBLite consensus disorder prediction 121 174 - -
Cco02g2164 334 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco02g2164 334 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2164 Cco-Chr2:34377155 Cco02g2233 Cco-Chr2:34945722 3.00E-29 dispersed
Cco10g2091 Cco-Chr10:34267190 Cco02g2164 Cco-Chr2:34377155 1.80E-37 wgd
Cco02g2164 Cco-Chr2:34377155 Cco03g0165 Cco-Chr3:1615655 9.60E-36 wgd
Cco02g2164 Cco-Chr2:34377155 Cco03g0254 Cco-Chr3:2777942 5.10E-29 wgd
Cco02g2164 Cco-Chr2:34377155 Cco04g1020 Cco-Chr4:25795764 7.30E-36 wgd
Cco02g2164 Cco-Chr2:34377155 Cco07g0327 Cco-Chr7:3355164 6.90E-42 wgd
Cco02g2164 Cco-Chr2:34377155 Cco09g2189 Cco-Chr9:36236490 3.30E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58839 PF02701 zf-Dof 4.70E-33 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2164 - - - 0.0