Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2203 ATGGATTGTGGAAGAAGATTTGGATTGCTGTTCTGGGTTTTGTTTATTTCCTTGCTGCCTTTCATTTCTTGTTTGTTTAAGCCGGTAGATAAGTATCTTATTGACTGTGGATCGGCTTCTAATGTCTCTGTGGGTAATCGTGTTTTCATGGCCGATAATTTGGCTTCACAGCTGCTTTCAACCCCACAACCCATTCTGGCTGATTCTAATACGTCTTCAGTACCCGCTAGTTCTTCTAATGATTCCTTGCTGTTCAAAACGGCTAGAATTTTCACTGGAACATCAAAATACAAGTTTCCAATTAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTGTTTTCTAGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAGATTTTGTTCTGCTGCGGGATTTAGTTGTAGGGAAGAATCCTATAGTCAAAGAATTCTCTGTGAACATAACATCAGATACTCTTGAAGTTATCTTTGTTCCTGTTAATGGCTCCATTGCATATGTGAATGCCATCGATGTTACTTCTGTTCCTGACATTGTCATTCTTGATGAAGCCAATTTGTTAGAACCATCTGGTAAATTTCAAGGGCTGTCTAACCAGGCATATGAGACGGTTGCTAGGGTTAATATGGGTGGGCCAAGTGTCGCTCCTGATAATGATCCTCTTACGCGAAGTTGGGTCTCTGATGAAGGCTTTCTAGTTAATAAGAATTCTGCAACAAGTTTCTCTAACATTGCAGCTGTTACATACAGTGCTGAAGGGGCAGCGCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTCACTGAGATGAACTCGAAAGATGATCCAAACAGCAATTTCAATGTGACATGGCGGTTTAAAGTGGATGCTGAGTTTCAGTATCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAATCTCTACACCAACTTTATTTCAGTGTTTACATTGATACGTGGCTGGTTGTTCAGGATCTAGATCTCAGTATTCCTCTTAACAACGCTCTGAGCACTCCATACTATATGGACTATGTTACAGGGGTGATCAAGAATGACATACTTCTTGTGAGTATTGGCCCATCGACTATAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAATTCAGTTGGCAGTCTGAGTGGGGAAGATGCTGTAATTAGTTTTCCAGATACGACTTCTTCAAGTAAGCACATTGGTGTCATTGTGGGTGTGAGTGTTGGGGCATTTGTTGCAGCTATATTGGTTGGGATTCTGTTTATGCTACACAGACGGAAAAGAAAGGGAATGCATCAAGCTCCATCAAAAACGTGGATTTCAATATCCACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACGATCACAAGTGCTGCTTCCAACTTTGGATATCGCATACCTTTTGCAACAGTTCAAGAGGCTACGAATAACTTTGATGAGAGTTGGGTTATTGGTATTGGTGGGTTTGGAAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAATCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTGTCACAGTTCCGTCATCGTCATCTTGTTTCATTGATTGGGTACTGTGATGAGAGGAATGAGATGATATTGATTTATGAGTACATGGAACAGGGGACCCTGAAGAGTCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGATTAGAGGTCTGCATCGGAGCTGCTAGAGGGCTTCATTACCTCCACACTGGTTATGCTAAACCGGTTATTCATCGTGATGTGAAGTCTGCTAATATTTTGCTCGATGAAACTCTCATGGCAAAGGTTGCTGACTTTGGGCTTTCAAAGACTGGACCTGAGATTGACCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTTGATCCTGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGGGTTGTTTTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCTAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACTTTAGTAGGAAAAATTAGACCAACTTCTCTTAGAAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTTGACAGGCCATCTATGGGAGACGTGTTATGGAATTTGGAGTATGCACTTCAGCTACAAGAAGCTGTCATTGAAGTTGATCCTGAAGATAACAGTACAAATATGATTGGCGAGCTCTCTCCACAAATTAACAATTTCAATGACATCGAGGCAGGTGTTTCTGCCACACGGTTTGACATTCCGGGTGCGGATGATCTCTCTGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2517 41.88 MDCGRRFGLLFWVLFISLLPFISCLFKPVDKYLIDCGSASNVSVGNRVFMADNLASQLLSTPQPILADSNTSSVPASSSNDSLLFKTARIFTGTSKYKFPIKAGRHWIRLYFYPFVFSSFNMSAANFSVSTQDFVLLRDLVVGKNPIVKEFSVNITSDTLEVIFVPVNGSIAYVNAIDVTSVPDIVILDEANLLEPSGKFQGLSNQAYETVARVNMGGPSVAPDNDPLTRSWVSDEGFLVNKNSATSFSNIAAVTYSAEGAAPEIAPNVVYGTLTEMNSKDDPNSNFNVTWRFKVDAEFQYLVRFHFCDIVSKSLHQLYFSVYIDTWLVVQDLDLSIPLNNALSTPYYMDYVTGVIKNDILLVSIGPSTIANVYPNAILNGLEIMKMNNSVGSLSGEDAVISFPDTTSSSKHIGVIVGVSVGAFVAAILVGILFMLHRRKRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNFGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNDIEAGVSATRFDIPGADDLSGVSMSRVFSQLVKSEGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34634429 34636945 + CcPI632755_02g022030.1 Cco02g2203 172960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2203 838 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Cco02g2203 838 CDD STKc_IRAK 503 768 - -
Cco02g2203 838 FunFam receptor-like protein kinase FERONIA 461 572 - -
Cco02g2203 838 Pfam Malectin-like domain 34 386 IPR024788 -
Cco02g2203 838 FunFam Putative receptor-like protein kinase 31 183 - -
Cco02g2203 838 FunFam Receptor-like protein kinase FERONIA 207 389 - -
Cco02g2203 838 Gene3D - 206 389 - -
Cco02g2203 838 Gene3D - 31 183 - -
Cco02g2203 838 Pfam Protein tyrosine and serine/threonine kinase 502 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2203 838 FunFam Receptor-like protein kinase FERONIA 573 788 - -
Cco02g2203 838 SMART serkin_6 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2203 838 Gene3D Phosphorylase Kinase; domain 1 460 572 - -
Cco02g2203 838 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2203 838 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524(InterPro)
Cco02g2203 838 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Cco02g2203 838 PANTHER OS07G0166700 PROTEIN 484 775 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco02g2203 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1474 Cco-Chr2:27248833 Cco02g2203 Cco-Chr2:34634429 1.80E-213 dispersed
Cco02g2203 Cco-Chr2:34634429 Cco11g1892 Cco-Chr11:31631667 3.70E-238 dispersed
Cco06g0351 Cco-Chr6:3938944 Cco02g2203 Cco-Chr2:34634429 7.60E-63 dispersed
Cco02g2203 Cco-Chr2:34634429 Cco05g0994 Cco-Chr5:8762956 2.50E-210 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86604 PF12819 Malectin_like 1.30E-30 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2203 - - - 0.0