Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2217 ATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACTCGTCCCGACCTCGGGCGAACCCGACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGCGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCATCCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGCCCTACGCGCTGCCGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGAATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAGGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGCGGCGGCAGCGGTGACAACAACAACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCCGCACCTACAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATTGGGATTATGAGGAAAAGTCAATCAAATATTGAAAGCATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACATGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAAGGCGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCAATATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACATTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTCGGAACCGAAGAGTACATTGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGAGGGAAGACCAGGCAAAAGACATTTGCCAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTGTATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA 3036 45.78 MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYSSRPRANPTWPNWVEPRSSAESDSAKLVAKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPSGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGSGDNNNDRFETTMIRRKSESAAPTTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFIGIMRKSQSNIESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHIALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSVSASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34759185 34770831 - CcPI632755_02g022170.1 Cco02g2217 172974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2217 1011 FunFam LOV domain-containing protein 677 761 - -
Cco02g2217 1011 Gene3D PAS domain 465 630 - -
Cco02g2217 1011 ProSiteProfiles Protein kinase domain profile. 678 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2217 1011 PANTHER FLIPPASE KINASE 1-RELATED 629 987 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g2217 1011 ProSiteProfiles PAS repeat profile. 186 257 IPR000014 -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 432 446 - -
Cco02g2217 1011 ProSiteProfiles PAS repeat profile. 481 550 IPR000014 -
Cco02g2217 1011 SMART pac_2 263 305 IPR001610 -
Cco02g2217 1011 SMART pac_2 554 596 IPR001610 -
Cco02g2217 1011 SMART pas_2 188 257 IPR000014 -
Cco02g2217 1011 SMART pas_2 479 548 IPR000014 -
Cco02g2217 1011 FunFam Putative LOV domain-containing protein 762 977 - -
Cco02g2217 1011 CDD PAS 492 592 IPR000014 -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 76 105 - -
Cco02g2217 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2217 1011 MobiDBLite consensus disorder prediction 147 172 - -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 347 471 - -
Cco02g2217 1011 ProSiteProfiles PAC domain profile. 551 605 IPR000700 -
Cco02g2217 1011 ProSiteProfiles PAC domain profile. 260 314 IPR000700 -
Cco02g2217 1011 SMART serkin_6 678 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2217 1011 SUPERFAMILY PYP-like sensor domain (PAS domain) 207 299 IPR035965 -
Cco02g2217 1011 SUPERFAMILY Protein kinase-like (PK-like) 655 986 IPR011009 -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 350 364 - -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 131 184 - -
Cco02g2217 1011 Gene3D Phosphorylase Kinase; domain 1 677 761 - -
Cco02g2217 1011 SUPERFAMILY PYP-like sensor domain (PAS domain) 493 592 IPR035965 -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 1 113 - -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 26 53 - -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 447 461 - -
Cco02g2217 1011 CDD STKc_phototropin_like 676 984 - -
Cco02g2217 1011 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524(InterPro)
Cco02g2217 1011 FunFam LOV domain-containing protein 466 630 - -
Cco02g2217 1011 NCBIfam PAS domain S-box protein 213 305 IPR000014 -
Cco02g2217 1011 NCBIfam PAS domain S-box protein 502 592 IPR000014 -
Cco02g2217 1011 FunFam Putative LOV domain-containing protein 200 356 - -
Cco02g2217 1011 Pfam Protein kinase domain 680 965 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2217 1011 Gene3D PAS domain 200 356 - -
Cco02g2217 1011 Pfam PAS domain 500 592 IPR000014 -
Cco02g2217 1011 Pfam PAS domain 207 303 IPR000014 -
Cco02g2217 1011 CDD PAS 213 302 IPR000014 -
Cco02g2217 1011 Gene3D Transferase(Phosphotransferase) domain 1 762 976 - -
Cco02g2217 1011 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0328 Cco-Chr2:2989299 Cco02g2217 Cco-Chr2:34759185 2.70E-235 dispersed
Cco02g2217 Cco-Chr2:34759185 Cco02g2354 Cco-Chr2:35959367 8.30E-99 dispersed
Cco02g2217 Cco-Chr2:34759185 Cco02g1154 Cco-Chr2:19883135 4.0e-311 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86605 PF00069 Pkinase 3.80E-63 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2217 K20715 - csv:101214662 1862.81