Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2217 | ATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACTCGTCCCGACCTCGGGCGAACCCGACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGCGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCATCCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGCCCTACGCGCTGCCGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGAATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAGGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGCGGCGGCAGCGGTGACAACAACAACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCCGCACCTACAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATTGGGATTATGAGGAAAAGTCAATCAAATATTGAAAGCATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACATGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAAGGCGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCAATATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACATTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTCGGAACCGAAGAGTACATTGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGAGGGAAGACCAGGCAAAAGACATTTGCCAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTGTATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA | 3036 | 45.78 | MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYSSRPRANPTWPNWVEPRSSAESDSAKLVAKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPSGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGSGDNNNDRFETTMIRRKSESAAPTTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFIGIMRKSQSNIESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHIALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSVSASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF | 1011 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34759185 | 34770831 | - | CcPI632755_02g022170.1 | Cco02g2217 | 172974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2217 | 1011 | FunFam | LOV domain-containing protein | 677 | 761 | - | - | |
Cco02g2217 | 1011 | Gene3D | PAS domain | 465 | 630 | - | - | |
Cco02g2217 | 1011 | ProSiteProfiles | Protein kinase domain profile. | 678 | 965 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2217 | 1011 | PANTHER | FLIPPASE KINASE 1-RELATED | 629 | 987 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco02g2217 | 1011 | ProSiteProfiles | PAS repeat profile. | 186 | 257 | IPR000014 | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 432 | 446 | - | - | |
Cco02g2217 | 1011 | ProSiteProfiles | PAS repeat profile. | 481 | 550 | IPR000014 | - | |
Cco02g2217 | 1011 | SMART | pac_2 | 263 | 305 | IPR001610 | - | |
Cco02g2217 | 1011 | SMART | pac_2 | 554 | 596 | IPR001610 | - | |
Cco02g2217 | 1011 | SMART | pas_2 | 188 | 257 | IPR000014 | - | |
Cco02g2217 | 1011 | SMART | pas_2 | 479 | 548 | IPR000014 | - | |
Cco02g2217 | 1011 | FunFam | Putative LOV domain-containing protein | 762 | 977 | - | - | |
Cco02g2217 | 1011 | CDD | PAS | 492 | 592 | IPR000014 | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 76 | 105 | - | - | |
Cco02g2217 | 1011 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 799 | 811 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 347 | 471 | - | - | |
Cco02g2217 | 1011 | ProSiteProfiles | PAC domain profile. | 551 | 605 | IPR000700 | - | |
Cco02g2217 | 1011 | ProSiteProfiles | PAC domain profile. | 260 | 314 | IPR000700 | - | |
Cco02g2217 | 1011 | SMART | serkin_6 | 678 | 965 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2217 | 1011 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 207 | 299 | IPR035965 | - | |
Cco02g2217 | 1011 | SUPERFAMILY | Protein kinase-like (PK-like) | 655 | 986 | IPR011009 | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 350 | 364 | - | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 131 | 184 | - | - | |
Cco02g2217 | 1011 | Gene3D | Phosphorylase Kinase; domain 1 | 677 | 761 | - | - | |
Cco02g2217 | 1011 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 493 | 592 | IPR035965 | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 447 | 461 | - | - | |
Cco02g2217 | 1011 | CDD | STKc_phototropin_like | 676 | 984 | - | - | |
Cco02g2217 | 1011 | ProSitePatterns | Protein kinases ATP-binding region signature. | 684 | 707 | IPR017441 | GO:0005524(InterPro) | |
Cco02g2217 | 1011 | FunFam | LOV domain-containing protein | 466 | 630 | - | - | |
Cco02g2217 | 1011 | NCBIfam | PAS domain S-box protein | 213 | 305 | IPR000014 | - | |
Cco02g2217 | 1011 | NCBIfam | PAS domain S-box protein | 502 | 592 | IPR000014 | - | |
Cco02g2217 | 1011 | FunFam | Putative LOV domain-containing protein | 200 | 356 | - | - | |
Cco02g2217 | 1011 | Pfam | Protein kinase domain | 680 | 965 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2217 | 1011 | Gene3D | PAS domain | 200 | 356 | - | - | |
Cco02g2217 | 1011 | Pfam | PAS domain | 500 | 592 | IPR000014 | - | |
Cco02g2217 | 1011 | Pfam | PAS domain | 207 | 303 | IPR000014 | - | |
Cco02g2217 | 1011 | CDD | PAS | 213 | 302 | IPR000014 | - | |
Cco02g2217 | 1011 | Gene3D | Transferase(Phosphotransferase) domain 1 | 762 | 976 | - | - | |
Cco02g2217 | 1011 | MobiDBLite | consensus disorder prediction | 392 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0328 | Cco-Chr2:2989299 | Cco02g2217 | Cco-Chr2:34759185 | 2.70E-235 | dispersed | |
Cco02g2217 | Cco-Chr2:34759185 | Cco02g2354 | Cco-Chr2:35959367 | 8.30E-99 | dispersed | |
Cco02g2217 | Cco-Chr2:34759185 | Cco02g1154 | Cco-Chr2:19883135 | 4.0e-311 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86605 | PF00069 | Pkinase | 3.80E-63 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2217 | K20715 | - | csv:101214662 | 1862.81 |