Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2219 ATGGGTTGCTTTAGCCATATCAAAAAGCAGAGGAAAAGATTATTAGGGAGCAATGTACAAAACATTCAACAAGCTTCTTCAGCAAAAGTAAAAACGGATCTGAAAGTAAAAACAAGGGAAGAAGTAAAAGAGATGGTTTATGAAAATGAGCAGCTGGCGTCAAATATAAACAAAGAGGTTTCGAGTGAAGCAAAAACAAAGGAAGAGATAGAAACATTTACATTTCAGGAACTTGCAGCCGCAACAGGAAATTTCAAGTCGGATTGCTTTCTGGGTGAAGGAGGATTTGGTAAGGTTTACAAGGGCCATTTGGGAAAAATCAACAAGCTTGTAGCTATAAAGCAACTTGATCGGAATGGGATTCAAGGGGCAAGAGAATTCGTGGTGGAAGTGGTGACATTAAGTTTGGCGAATCATCCAAATCTTGTAAAATTGATTGGGTATTGTGCTGAGGGTGATCAAAGACTCTTGGTTTACGAGTTCATGCCATTAGGCTCATTGGACAAACATTTGCACGATGTCCCACTAGGGAAAAAAGTGCTTGATTGGAATACAAGAATGAAGATAGCAGTGGGAGCAGCAAAAGGATTGGAATATTTACACAACAAAATGAGGCCAGCAGTTATATATAGGGACTTAAAATGCTCCAATATTTTGTTGGGTGAAGGTTATTGGCCAAAGCTTTCAGATTTTGGTCTAGCCAAAGTGGGTCCTAGTGGAGATAACACTCATGTCTCAACTAGAGTTATGGGAACTTATGGATATTGTGCACCAGATTATGCAATGACTGGCCAATTGACATTCAAATGTGATATCTATAGCTTTGGAGTTGTTCTATTGGAACTCATCACTGGAAGAAAAGCCATTGACTATACAAGACCTTCAAAGGAGCTGAGTTTGGTAGCATGGGCAAGACCATTGTTCCGAGACCGAAAGAGGTTCTTGGTAATGGCGGACCCAAGGCTGGACGGTCAATTTCCCATTAGAGGATTGTATCAAGCTCTTGCCATTGCAGCAATGTGTCTACAAGAACAACCTACAATGAGGCCACTTATATCTGAAGTCGTCGCTGCTTTAAATTTCCTTGCTTCTCAAAATTTTACTCAAAGAAGAAGGGATTAA 1122 40.11 MGCFSHIKKQRKRLLGSNVQNIQQASSAKVKTDLKVKTREEVKEMVYENEQLASNINKEVSSEAKTKEEIETFTFQELAAATGNFKSDCFLGEGGFGKVYKGHLGKINKLVAIKQLDRNGIQGAREFVVEVVTLSLANHPNLVKLIGYCAEGDQRLLVYEFMPLGSLDKHLHDVPLGKKVLDWNTRMKIAVGAAKGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKAIDYTRPSKELSLVAWARPLFRDRKRFLVMADPRLDGQFPIRGLYQALAIAAMCLQEQPTMRPLISEVVAALNFLASQNFTQRRRD 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34782653 34787993 - CcPI632755_02g022190.1 Cco02g2219 172976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2219 373 PANTHER OS07G0668900 PROTEIN 40 369 - -
Cco02g2219 373 Pfam Protein kinase domain 90 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2219 373 CDD STKc_IRAK 91 360 - -
Cco02g2219 373 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Cco02g2219 373 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Cco02g2219 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2219 373 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2219 373 SMART serkin_6 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2219 373 SUPERFAMILY Protein kinase-like (PK-like) 67 361 IPR011009 -
Cco02g2219 373 FunFam Serine/threonine-protein kinase PBS1 162 373 - -
Cco02g2219 373 FunFam probable serine/threonine-protein kinase RLCKVII 57 161 - -
Cco02g2219 373 Gene3D Phosphorylase Kinase; domain 1 53 161 - -
Cco02g2219 373 PIRSF ILK 15 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2219 Cco-Chr2:34782653 Cco03g0222 Cco-Chr3:2313428 1.00E-147 dispersed
Cco10g2058 Cco-Chr10:33962794 Cco02g2219 Cco-Chr2:34782653 3.80E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86606 PF00069 Pkinase 2.10E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2219 - - - 0.0