Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2225 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGTTCCACACGCGCCGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGCGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTCTACAAACTAGCTTCTTTCCCTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCACCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGCACCGCCATAATGCTTATTCTTCTATATTAGAGGTGAAATGCGGCCAAAAATGA 1431 49.41 MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGAVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGRNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSPQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLHRHNAYSSILEVKCGQK 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34853474 34857372 - CcPI632755_02g022250.1 Cco02g2225 172982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2225 476 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Cco02g2225 476 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 MobiDBLite consensus disorder prediction 28 58 - -
Cco02g2225 476 MobiDBLite consensus disorder prediction 131 158 - -
Cco02g2225 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 333 - -
Cco02g2225 476 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Cco02g2225 476 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Cco02g2225 476 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Cco02g2225 476 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2225 476 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1325 Cco-Chr2:25069312 Cco02g2225 Cco-Chr2:34853474 2.60E-90 dispersed
Cco02g1495 Cco-Chr2:27498678 Cco02g2225 Cco-Chr2:34853474 3.00E-69 dispersed
Cco02g2225 Cco-Chr2:34853474 Cco04g1452 Cco-Chr4:29944712 4.60E-92 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco02g2225 Cco-Chr2:34853474 2.40E-118 wgd
Cco02g2225 Cco-Chr2:34853474 Cco04g1079 Cco-Chr4:26261938 1.50E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58844 PF00847 AP2 3.00E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2225 K09284 - csv:101222024 856.284