Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2230 ATGGAAGAGTTCTTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATTATCCCCGTCGAGTCCGCTCATCGAGCCATTTCTTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCCTCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGCGGAATTATTTGTAAATCCAAAGCTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTCGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACTGAACTTGAGGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGTTTCATTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGGTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCACTGCAGCGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTAATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCGATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGCTCCTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGCTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCGGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGTGATCTTCCTTAACAGTCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTTCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGCGAGAATGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATCTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATCCTTGGAACCTCAGAGGTAGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGACGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTTGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTATCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATAACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCATTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGTTACAAGTTCAAACCTTTTTCCTTTGCCTCCATCGACGAGGATGAAGATTAA 2460 40.16 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSNQSGLRFICGIICKSKALRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGSSAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWFTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGILGTSEVDLEVEPDSARQHQDDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDEDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34902187 34912471 - CcPI632755_02g022300.1 Cco02g2230 172987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2230 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cco02g2230 819 PANTHER VACUOLAR PROTON ATPASES 11 818 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cco02g2230 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco02g2230 819 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0512 Cco-Chr2:4770590 Cco02g2230 Cco-Chr2:34902187 1.10E-295 dispersed
Cco02g2230 Cco-Chr2:34902187 Cco08g1644 Cco-Chr8:27928679 2.60E-300 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2230 K02154 - csv:101216514 1610.12