Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2238 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 588 49.15 MEGSDSIATVSSTPLSQSPSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34988973 34990104 + CcPI632755_02g022380.1 Cco02g2238 172995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2238 195 MobiDBLite consensus disorder prediction 1 29 - -
Cco02g2238 195 Coils Coil 113 140 - -
Cco02g2238 195 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Cco02g2238 195 MobiDBLite consensus disorder prediction 1 19 - -
Cco02g2238 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 155 - -
Cco02g2238 195 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1504 Cco-Chr2:27627675 Cco02g2238 Cco-Chr2:34988973 4.40E-51 dispersed
Cco02g2238 Cco-Chr2:34988973 Cco03g0247 Cco-Chr3:2730692 7.00E-55 dispersed
Cco02g2238 Cco-Chr2:34988973 Cco02g1984 Cco-Chr2:32785538 1.80E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58846 PF03195 LOB 3.70E-41 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2238 - - - 0.0