Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2238 | ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA | 588 | 49.15 | MEGSDSIATVSSTPLSQSPSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34988973 | 34990104 | + | CcPI632755_02g022380.1 | Cco02g2238 | 172995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2238 | 195 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cco02g2238 | 195 | Coils | Coil | 113 | 140 | - | - | |
Cco02g2238 | 195 | ProSiteProfiles | LOB domain profile. | 33 | 134 | IPR004883 | - | |
Cco02g2238 | 195 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco02g2238 | 195 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 33 | 155 | - | - | |
Cco02g2238 | 195 | Pfam | Lateral organ boundaries (LOB) domain | 34 | 131 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1504 | Cco-Chr2:27627675 | Cco02g2238 | Cco-Chr2:34988973 | 4.40E-51 | dispersed | |
Cco02g2238 | Cco-Chr2:34988973 | Cco03g0247 | Cco-Chr3:2730692 | 7.00E-55 | dispersed | |
Cco02g2238 | Cco-Chr2:34988973 | Cco02g1984 | Cco-Chr2:32785538 | 1.80E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58846 | PF03195 | LOB | 3.70E-41 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2238 | - | - | - | 0.0 |