Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2251 ATGCAGAAAAGAGTTGTACTCATACTGCTCACTGCTAACTGTTCTGTTGGGAAGCTTAGCAATAGGACACTTGAAGTAACCCCTGGGTTGTTCATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCGACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGAGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATTCTTGTGCAAACGATCTTGCTTGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCGGAAAGAAGGTTTAATGGTGTAGTTGTCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATCGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCGTCTCCACGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTGTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCCAATGGTGCCCAAAACATGTATTTCCCTCATAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGACAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACTAAAATGGAAAGGACTAATCGTTCACTTGATCGGGAGTCTCTACATCTAGTGTCTGCTCCTCTAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGCGTGACTTCTGTGACGCGGTTTCTAAAATCCATATATACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGTACTCGAAGTCGGTAGCTTTGCTGCCATGAACGGCGTCATATAG 2532 44.59 MQKRVVLILLTANCSVGKLSNRTLEVTPGLFMEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLESKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNSCANDLACVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENIGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPHSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNRSLDRESLHLVSAPLTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWRDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTVLEVGSFAAMNGVI 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35067857 35075661 - CcPI632755_02g022510.1 Cco02g2251 173008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2251 843 Gene3D - 364 433 - -
Cco02g2251 843 FunFam Auxin response factor 363 433 - -
Cco02g2251 843 Gene3D - 701 794 - -
Cco02g2251 843 SUPERFAMILY DNA-binding pseudobarrel domain 194 311 IPR015300 -
Cco02g2251 843 CDD B3_DNA 198 300 IPR003340 GO:0003677(InterPro)
Cco02g2251 843 Pfam AUX/IAA family 696 790 IPR033389 -
Cco02g2251 843 Gene3D - 198 302 IPR015300 -
Cco02g2251 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 82 795 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco02g2251 843 ProSiteProfiles PB1 domain profile. 705 789 IPR053793 -
Cco02g2251 843 SMART B3_2 200 302 IPR003340 GO:0003677(InterPro)
Cco02g2251 843 SUPERFAMILY CAD & PB1 domains 707 784 - -
Cco02g2251 843 FunFam Auxin response factor 198 302 - -
Cco02g2251 843 Pfam B3 DNA binding domain 200 301 IPR003340 GO:0003677(InterPro)
Cco02g2251 843 ProSiteProfiles B3 DNA-binding domain profile. 200 302 IPR003340 GO:0003677(InterPro)
Cco02g2251 843 Pfam Auxin response factor 327 407 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2251 Cco-Chr2:35067857 Cco06g2035 Cco-Chr6:30315379 1.70E-137 dispersed
Cco04g2119 Cco-Chr4:35043708 Cco02g2251 Cco-Chr2:35067857 3.60E-128 transposed
Cco02g2251 Cco-Chr2:35067857 Cco04g1106 Cco-Chr4:26496418 2.10E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58847 PF02309 AUX_IAA 3.10E-07 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2251 K14486 - csv:101212503 1511.12