Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2256 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATATGAGAAGTATGATGTCGAGAAACAGCGTCAACTCAATGCTTATGGTGACGATGCCTTTGCTCGCCTCTTCGCCGCCGTCGAACTCGAAATCGACGCCGCTCTCCAGAAATCTGAGGCTGCCTCAACTGAGAAGAATAGAGCTGCTGCAGTTGCAATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCATAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTGGAGGTCAGAGATGATCTTGTTCTTGCGCTTGAAGAGAAGATTAAAGCCATACCAGATGGAAGTACCTCAGGAGCCAAACAATCTGGAGGATGGGAGTCCTCCTCCTCATCTAACAATATCAAGTTTGATTCATCAGATGGAAACTTTGAGAGCCAGTATTTCCAGCAAAGTGAAGAATCAAGCCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTCGATGTCATATCTGAAGGTTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATCGATGAGATCGACGCAAAGGTAGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACGCTCTATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATTATTCTTCTCTGTATAATTCTTGGAATTGCTTCTTACTTGTACAATATATTGAGCTGA 798 43.23 MTVIDIIFRVDSICKKYEKYDVEKQRQLNAYGDDAFARLFAAVELEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGSTSGAKQSGGWESSSSSNNIKFDSSDGNFESQYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIILLCIILGIASYLYNILS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35124978 35127314 + CcPI632755_02g022560.1 Cco02g2256 173013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2256 265 PANTHER SYNTAXIN 46 251 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco02g2256 265 Coils Coil 209 229 - -
Cco02g2256 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco02g2256 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Cco02g2256 265 MobiDBLite consensus disorder prediction 124 145 - -
Cco02g2256 265 CDD SNARE_Qc 176 232 - -
Cco02g2256 265 FunFam Putative syntaxin-71-like 171 232 - -
Cco02g2256 265 MobiDBLite consensus disorder prediction 122 145 - -
Cco02g2256 265 Pfam SNARE domain 208 257 IPR000727 -
Cco02g2256 265 Gene3D - 171 232 - -
Cco02g2256 265 SMART tSNARE_6 166 233 IPR000727 -
Cco02g2256 265 SUPERFAMILY SNARE fusion complex 167 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2031 Cco-Chr10:33728695 Cco02g2256 Cco-Chr2:35124978 8.30E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2256 K08506 - csv:101211289 453.366