Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2256 | ATGACCGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATATGAGAAGTATGATGTCGAGAAACAGCGTCAACTCAATGCTTATGGTGACGATGCCTTTGCTCGCCTCTTCGCCGCCGTCGAACTCGAAATCGACGCCGCTCTCCAGAAATCTGAGGCTGCCTCAACTGAGAAGAATAGAGCTGCTGCAGTTGCAATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCATAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTGGAGGTCAGAGATGATCTTGTTCTTGCGCTTGAAGAGAAGATTAAAGCCATACCAGATGGAAGTACCTCAGGAGCCAAACAATCTGGAGGATGGGAGTCCTCCTCCTCATCTAACAATATCAAGTTTGATTCATCAGATGGAAACTTTGAGAGCCAGTATTTCCAGCAAAGTGAAGAATCAAGCCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTCGATGTCATATCTGAAGGTTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATCGATGAGATCGACGCAAAGGTAGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACGCTCTATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATTATTCTTCTCTGTATAATTCTTGGAATTGCTTCTTACTTGTACAATATATTGAGCTGA | 798 | 43.23 | MTVIDIIFRVDSICKKYEKYDVEKQRQLNAYGDDAFARLFAAVELEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGSTSGAKQSGGWESSSSSNNIKFDSSDGNFESQYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIILLCIILGIASYLYNILS | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35124978 | 35127314 | + | CcPI632755_02g022560.1 | Cco02g2256 | 173013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2256 | 265 | PANTHER | SYNTAXIN | 46 | 251 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cco02g2256 | 265 | Coils | Coil | 209 | 229 | - | - | |
Cco02g2256 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 177 | 216 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cco02g2256 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 171 | 233 | IPR000727 | - | |
Cco02g2256 | 265 | MobiDBLite | consensus disorder prediction | 124 | 145 | - | - | |
Cco02g2256 | 265 | CDD | SNARE_Qc | 176 | 232 | - | - | |
Cco02g2256 | 265 | FunFam | Putative syntaxin-71-like | 171 | 232 | - | - | |
Cco02g2256 | 265 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
Cco02g2256 | 265 | Pfam | SNARE domain | 208 | 257 | IPR000727 | - | |
Cco02g2256 | 265 | Gene3D | - | 171 | 232 | - | - | |
Cco02g2256 | 265 | SMART | tSNARE_6 | 166 | 233 | IPR000727 | - | |
Cco02g2256 | 265 | SUPERFAMILY | SNARE fusion complex | 167 | 231 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g2031 | Cco-Chr10:33728695 | Cco02g2256 | Cco-Chr2:35124978 | 8.30E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2256 | K08506 | - | csv:101211289 | 453.366 |