Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2263 | ATGGGGAAAGACGTTGAAGTTGCAGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTCATCGACCCTGAAGAACTAACCAAATGGTCTCTTTACCGAGCCGCCATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAAAGCGACCCTTCCGTTTCCACCGACCCCTGTAACGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGTATGATTTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTGTACATCATTGCTCAGTGCGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAGAGCCTTCCAATCTGCTTATTACGTTAGATACAACGGCGGTGCTAATATGCTCAGTAATGGGTATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGCTTTGGAGCTGCTGTCATCTTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAACGCTTGA | 858 | 49.53 | MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVRAFQSAYYVRYNGGANMLSNGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35171958 | 35172991 | - | CcPI632755_02g022630.1 | Cco02g2263 | 173020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2263 | 285 | FunFam | Probable aquaporin PIP1-2 | 24 | 285 | - | - | |
Cco02g2263 | 285 | Pfam | Major intrinsic protein | 31 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | NCBIfam | MIP family channel protein | 43 | 265 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Cco02g2263 | 285 | CDD | MIP | 39 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g2263 | 285 | Gene3D | Glycerol uptake facilitator protein. | 24 | 285 | IPR023271 | - | |
Cco02g2263 | 285 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 2 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cco02g2263 | 285 | SUPERFAMILY | Aquaporin-like | 30 | 271 | IPR023271 | - | |
Cco02g2263 | 285 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2263 | Cco-Chr2:35171958 | Cco04g1099 | Cco-Chr4:26416435 | 1.10E-136 | dispersed | |
Cco10g2017 | Cco-Chr10:33662070 | Cco02g2263 | Cco-Chr2:35171958 | 1.40E-120 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2263 | K09872 | - | csv:101215300 | 547.74 |