Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2263 ATGGGGAAAGACGTTGAAGTTGCAGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTCATCGACCCTGAAGAACTAACCAAATGGTCTCTTTACCGAGCCGCCATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAAAGCGACCCTTCCGTTTCCACCGACCCCTGTAACGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGTATGATTTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTGTACATCATTGCTCAGTGCGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAGAGCCTTCCAATCTGCTTATTACGTTAGATACAACGGCGGTGCTAATATGCTCAGTAATGGGTATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGCTTTGGAGCTGCTGTCATCTTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAACGCTTGA 858 49.53 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVRAFQSAYYVRYNGGANMLSNGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35171958 35172991 - CcPI632755_02g022630.1 Cco02g2263 173020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2263 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Cco02g2263 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cco02g2263 285 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2263 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cco02g2263 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco02g2263 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cco02g2263 285 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2263 Cco-Chr2:35171958 Cco04g1099 Cco-Chr4:26416435 1.10E-136 dispersed
Cco10g2017 Cco-Chr10:33662070 Cco02g2263 Cco-Chr2:35171958 1.40E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2263 K09872 - csv:101215300 547.74