Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2268 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAACTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCATGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACGATAACCTTAGAAAACGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCAAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTCAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCGATGGTACAAGAAGATGCTTTTGTTTCAAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGTGTCATTTCCTCAGTGCAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGTCCCTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTAGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTCGCATACTTGCCGGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAACCTTCTTCAATGGCTGTCCTCGTCCTCATCCATTGGAGCAGGAGCGGGAGGAATGAAGATGAAGATAACGATGTTTGTTCGTCAATGTCTAATGCAATGCCTCCTTCTCCAAAGTAA 2574 46.43 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKPSSMAVLVLIHWSRSGRNEDEDNDVCSSMSNAMPPSPK 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35217665 35223387 + CcPI632755_02g022680.1 Cco02g2268 173025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2268 857 Gene3D - 19 91 - -
Cco02g2268 857 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Cco02g2268 857 Coils Coil 80 121 - -
Cco02g2268 857 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
Cco02g2268 857 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Cco02g2268 857 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cco02g2268 857 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Cco02g2268 857 SUPERFAMILY Bet v1-like 164 376 - -
Cco02g2268 857 Pfam MEKHLA domain 697 819 IPR013978 -
Cco02g2268 857 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 819 IPR044830 GO:0003700(InterPro)
Cco02g2268 857 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Cco02g2268 857 CDD bZIP 77 116 - -
Cco02g2268 857 CDD START_ArGLABRA2_like 159 375 - -
Cco02g2268 857 Gene3D - 201 379 IPR023393 -
Cco02g2268 857 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Cco02g2268 857 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cco02g2268 857 MobiDBLite consensus disorder prediction 837 857 - -
Cco02g2268 857 MobiDBLite consensus disorder prediction 599 629 - -
Cco02g2268 857 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1512 Cco-Chr1:27169476 Cco02g2268 Cco-Chr2:35217665 0.00E+00 dispersed
Cco02g2268 Cco-Chr2:35217665 Cco03g0821 Cco-Chr3:8987953 0.00E+00 dispersed
Cco02g2268 Cco-Chr2:35217665 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58850 PF01852 START 4.30E-46 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2268 K09338 - csv:101215773 1581.23