Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2271 ATGAAAGAAGCAGAGAAAAATTTAGATCCTCAACTATGGCATGCCTGTGCAGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCGCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTCGCGAATATAAGAATGGTTCCACTGGCGAATAACGACCTCAATTTCGAAGAGGGGGGTTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTCGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGCGTCGGAATCCGGCGAGCCAAAAGGGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAGTTGCATCCCACCTTATGGTGGATTGACGATGTTTTTAAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTAGTGGGAACTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTGAAAGTCTCATCGGTTCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTATTCTCCTCCTCCTCCTCCTCCTCCTTCTCTTTGTTTCATTCACTTTCCTCTGCAATTTCTTCTGCACCGGACACTATCATTAAAGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCGTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACACTGAATTCCCACTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCGGATTTCCATCTCAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCAGTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCGAAGTTGGAAAGATCCGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCTGGTGACATTCGTTCACCTCAAACAGACAAAGGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGCACAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTAAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCGGACAAGCTGGGAAGGACAATGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2229 48.45 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLANNDLNFEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGSCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGSGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKVSSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVFSSSSSSSFSLFHSLSSAISSAPDTIIKVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDTEFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNKLQLGLVPSSFQQLDFQSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTDKGSLDVNLERVKFLSDGTGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTMMDGMRSGENGLDASNKTGPLSIFA 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35254091 35257018 - CcPI632755_02g022710.1 Cco02g2271 173028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2271 742 ProSiteProfiles PB1 domain profile. 630 710 IPR053793 -
Cco02g2271 742 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677(InterPro)
Cco02g2271 742 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 714 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco02g2271 742 FunFam Auxin response factor 109 213 - -
Cco02g2271 742 MobiDBLite consensus disorder prediction 251 271 - -
Cco02g2271 742 CDD B3_DNA 110 211 IPR003340 GO:0003677(InterPro)
Cco02g2271 742 Pfam Auxin response factor 280 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco02g2271 742 MobiDBLite consensus disorder prediction 514 534 - -
Cco02g2271 742 Gene3D - 630 715 - -
Cco02g2271 742 SUPERFAMILY DNA-binding pseudobarrel domain 106 215 IPR015300 -
Cco02g2271 742 Gene3D - 381 420 - -
Cco02g2271 742 Gene3D - 317 375 - -
Cco02g2271 742 Gene3D - 109 213 IPR015300 -
Cco02g2271 742 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677(InterPro)
Cco02g2271 742 SMART B3_2 111 213 IPR003340 GO:0003677(InterPro)
Cco02g2271 742 MobiDBLite consensus disorder prediction 514 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2271 Cco-Chr2:35254091 Cco08g0894 Cco-Chr8:20796660 5.00E-202 dispersed
Cco02g2271 Cco-Chr2:35254091 Cco04g1106 Cco-Chr4:26496418 9.90E-259 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58851 PF02362 B3 1.50E-21 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2271 K14486 - csv:101216500 1338.17