Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2273 ATGTCTATTTCATTGAACATTTCAAAGCCCATTTCCCCATTTCATTCAAATTCTGAGTTTCAACTCCTCATTTCGGCTACAACAACAACAAGCCCTTCTCTTCATGCTTTGAAACAGGTTAACTCCATTAGAACTGCAGCCAAAGTTTTCGTTTGGGAAGATCTTTATGGCTTATGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATAAATGGTGGTGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCAGCAAGAGAACTTCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAGGGATGAGGTGTGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTGATAGATCCTTTTAAGATAGCAATAAGGTATCTACGTTATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTAATTCCCAACCTTAGTGGTTCAACAATGACAAACACTAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTATGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCGTGGTTTAATATGAGCAACATTAAAAGCTCATGCAATCCAAGTGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTTAGTTCCTTAGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCAACAACTGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATATCTCGTGCGAGAAGGCGACCCAGTCAATGAAATGTTATTCATAATCAGAGGTCATCTCGACTCGTACACCACTAATGGTGGTAGAACCGGGTTTTTCAACTCTTGTCGTATTGGCCCCGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGTCCAAGTGTTGTACTTCCTTCTTCCACTCGAACGGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTCCGATTCTACTCGCATCAATGGCGAACGTGGGCTGCATGCTTTGTTCAAGCAGCATGGCGGAGATATAAGAGACGAAAAGAGCGAGCTGAGCTCAGAGCTAGAGAGAACTATCCGGCTACCAAAGTTGAGTCCCCACTTTCACCACCACCGACATCGAACTTGGATTCACGTTCAGGAAATGCTAGAAGGGGATTGAATAAGCGTTGTGTGTCGGATGCTGGGGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCCGACTTCTCCATTGTCGAGGAATAA 2250 43.2 MSISLNISKPISPFHSNSEFQLLISATTTTSPSLHALKQVNSIRTAAKVFVWEDLYGLWFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSSKRTSASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPFKIAIRYLRYGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCMFDKSCKDGFFDCHKVDDPQRDSWFNMSNIKSSCNPSGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARENYPATKVESPLSPPPTSNLDSRSGNARRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35306808 35310797 - CcPI632755_02g022730.1 Cco02g2273 173030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2273 749 Gene3D Jelly Rolls 527 647 IPR014710 -
Cco02g2273 749 MobiDBLite consensus disorder prediction 703 717 - -
Cco02g2273 749 SMART cnmp_10 529 660 IPR000595 -
Cco02g2273 749 Pfam Ion transport protein 137 456 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g2273 749 Gene3D Helix hairpin bin 456 520 - -
Cco02g2273 749 Gene3D - 135 453 - -
Cco02g2273 749 MobiDBLite consensus disorder prediction 690 721 - -
Cco02g2273 749 Pfam Cyclic nucleotide-binding domain 552 612 IPR000595 -
Cco02g2273 749 FunFam Cyclic nucleotide-gated ion channel 1 456 520 - -
Cco02g2273 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 104 694 - -
Cco02g2273 749 ProSiteProfiles cAMP/cGMP binding motif profile. 529 626 IPR000595 -
Cco02g2273 749 CDD CAP_ED 529 660 IPR000595 -
Cco02g2273 749 FunFam Cyclic nucleotide-gated ion channel 1 527 645 - -
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 193 202 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 398 415 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 424 435 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 492 499 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 442 451 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 PRINTS EAG/ELK/ERG potassium channel family signature 310 320 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g2273 749 SUPERFAMILY cAMP-binding domain-like 459 654 IPR018490 -
Cco02g2273 749 SUPERFAMILY Voltage-gated potassium channels 129 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0051 Cco-Chr1:383331 Cco02g2273 Cco-Chr2:35306808 2.20E-186 dispersed
Cco02g2273 Cco-Chr2:35306808 Cco04g1103 Cco-Chr4:26448001 1.00E-215 dispersed
Cco02g2273 Cco-Chr2:35306808 Cco10g1423 Cco-Chr10:27327317 1.60E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2273 K05391 - csv:101210775 1340.87