Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2275 ATGGGTCACTTTCAGAGTGGTGGTCGATGGGCTCTGTTCTGTTCTGTTTTCAGCCTGATTCCAATTCTGAATATATCCGAACCTTTAGCGGTCTCTGTCCACCACAATTCCCTTTCTGTCATGTACCTTTCCTTCCTTGCCATTCTTCCTCTTTCACTTCCACCCATTTTTTATAAAATGAAGCACCAAGTGGCAACCACCTTCATTTCTTTAATGATTTTTATCTTGATGCAACAAGTCATTTGTGCTGATACTTCTGATACTTCTACCCCTGGCAACTGGACATGTAAATGTTTTTCTTCATACCAAGAAAATCAGAGATTAACACTTGGGGTAAATTGTTCTACGTCGTGTTCATGTTCACAAGATGTTGGGGGAATTGGACTGTGGACATGCATCTGTTCAACTGATGGCTTCCCAAAAGTTGTAGCCGAACACCGTGATTCTAACTGTTTTACGTCATGCAACTGCTCTTATGGACTGCTTCCGGAGTCACCATCTTCTAAAAGGCACATTTCAAGCAACGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCCTTCTTCATCTTAGTGGTTTGCTATCTTTGTCAAAGGGGCAAGTACCATGTTCGAACTCCAATATTTTCATTAGATAAGCAAATGAGCTACAACAGTTTGACCAACCTAATTAGTCACAAGAGTTCTTCAACACTGAATAGTAACGTTATGATGGATTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAATCAATGCTTGTTGAGGACTAAATCTTGGAGTATGTGTGGGGTCATCATCCAATTTTCATATTCAGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGTGGGACGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAATTGAAGGACGGTAGAACAGTGGCTGTAAAGCGGCTCAATATTAAAGGAGGACCGGATGTGGACTACTTATTCTTAACAGAAATACAATTGTTATCAAGACTTCATCATTGCCACGTGGTTCCTCTACTTGGTTATTGCACAGAATCAAGGGGGAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGAAGCTTCAGAGGAGAAAATGGATTGGGGTACTCGTGTTACAATTGCTTTGGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGAGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCTAGAATGCAGGGGACTTTTGGGTACTTTGCACCGGAGTATGCAATTGTTGGAAGAGCCTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTTGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGAGAGGAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGCAGGCTAGTCATAACAGAGTTGCCCGACCCAAATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTTCAGGAGAGGCTGTCAGCCTGTAGTGTGGAGAGTGAACCAAACATGGTAAATGACAACATGAATCCTATAGGGAAACAAGTCCATACAGAGGTGATTCCCATCGATGATGTGATGGCAAGGCAAGCTTCTTCGCGCAAATGGTTCGATCGCTATTCACTACCATTGGATATTGATCGTTCACTTTGTGCTGGCAACTATGACAACCAAGATATTGTTTCTTTTGAGCACATGGAAAGACTAGTACCCTTGGCTTTAAAGGGCCGCAATCTCCAAGTCCAAGCCCCAGATGATGAAACAGTAGACTTGACTGAGCCTCGGTTCGAGTCATTCTGCGTCGTGAATGTCAGATCATCTTCATAG 2112 41.67 MGHFQSGGRWALFCSVFSLIPILNISEPLAVSVHHNSLSVMYLSFLAILPLSLPPIFYKMKHQVATTFISLMIFILMQQVICADTSDTSTPGNWTCKCFSSYQENQRLTLGVNCSTSCSCSQDVGGIGLWTCICSTDGFPKVVAEHRDSNCFTSCNCSYGLLPESPSSKRHISSNVVVIILSLCVIIITLAFFILVVCYLCQRGKYHVRTPIFSLDKQMSYNSLTNLISHKSSSTLNSNVMMDSPVNNIKGCFFMNQCLLRTKSWSMCGVIIQFSYSELENATNKFSSSHLVGRGGSSFVYRGELKDGRTVAVKRLNIKGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDEASEEKMDWGTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLAIWAAPRLQNSRLVITELPDPNLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVFQERLSACSVESEPNMVNDNMNPIGKQVHTEVIPIDDVMARQASSRKWFDRYSLPLDIDRSLCAGNYDNQDIVSFEHMERLVPLALKGRNLQVQAPDDETVDLTEPRFESFCVVNVRSSS 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35325850 35332294 - CcPI632755_02g022750.1 Cco02g2275 173032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2275 703 FunFam receptor-like serine/threonine-protein kinase NCRK 261 366 - -
Cco02g2275 703 SMART serkin_6 286 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2275 703 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524(InterPro)
Cco02g2275 703 Gene3D Transferase(Phosphotransferase) domain 1 367 592 - -
Cco02g2275 703 SUPERFAMILY Protein kinase-like (PK-like) 266 566 IPR011009 -
Cco02g2275 703 Pfam Protein kinase domain 288 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2275 703 ProSiteProfiles Protein kinase domain profile. 286 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2275 703 PANTHER OS01G0750732 PROTEIN 132 581 IPR050885 -
Cco02g2275 703 FunFam receptor-like serine/threonine-protein kinase NCRK 367 578 - -
Cco02g2275 703 CDD STKc_IRAK 292 569 - -
Cco02g2275 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2275 703 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2275 Cco-Chr2:35325850 Cco11g0541 Cco-Chr11:5714802 1.40E-65 dispersed
Cco02g2275 Cco-Chr2:35325850 Cco02g2283 Cco-Chr2:35394525 2.30E-18 proximal
Cco02g2275 Cco-Chr2:35325850 Cco03g0222 Cco-Chr3:2313428 1.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86608 PF00069 Pkinase 2.40E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2275 - - - 0.0