Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2278 ATGAAACCCAACACTTGCAGTACCAATGGCCACGTCTCCGCCGTGGATGGTCTCTGCTTGAACGATCCATTGTACTGGGGCACCGCAGCCGAGGGGCTCAAAGGAAGCCACCTCGACGAGGTGAAGAAAATGGTGGGGGAGTACCGGCGAGGGGTGGTGCGGCTCGGTGGAGAGAGCTTGACGATTGGGCAGGTGGCGGCGGTGGCGTTGCACGACGGCGGAGTGAAGGTGGAACTGAATGAGGCGGCGAGAGAGGGAGTGAAGGCGAGTAGTGATTGGGTAATGGAGAGTATGAACAAAGGGACAGATAGTTATGGAGTCACCACTGGATTTGGTGCGACCTCCCATCGGAGAACCAATCAAGGAGCTGCTCTGCAGAAGGAGCTTATTCGGTTCTTGAACGCTGGAATATTTGGGAATGGAACAGAGTCTAATCACACGCTGCCTCACACCGCTACAAGGGCAGCCATGTTGGTCAGAATCAACACTCTTCTCCAAGGTTACTCTGGCATTAGATTTGAGATTTTGGAGTCAATTACGAAACTTCTTAACCACAATGTCACACCTTGCCTTCCTTTGCGAGGCACCATTACAGCTTCTGGTGATTTGGTTCCCTTTTCCTATATTGCTGGCTTTCTGACTGGTCGTCCCAATGCCAAGGCTATTGGCCCAACTGGCAATCTCCTCGATGTTGGAGCAGCTTTTAAACTTGCTGGCATTGATGGTGGATTCTTCGAACTACAACCTAAAGAGGGACTTGCACTTGTCAATGGGACGGGTGTTGGATCTGGTTTGGCATCTATTGTTTTGTTTGAGGCCAATATATTGGCTCTTTTGTCTGAGGTCATTTCAGCAATTTTTGCTGAAGTAATGCAAGGAAAACCTGAGTTTACTGATCACTTGACTCATAAATTGAAACATCATCCGGGTCAAATTGAGGCAGCAGCCATAATGGAGCATCTTTTGGATGGGAGTGCTTTCATAAAAGATGCTAAGAAGTTACACGAGTTGGATCCTCTTCAAAAGCCGAAACAAGACCGTTATGCTCTTCGGACTTCACCTCAATGGCTAGGCCCTCAAATTGAAGTGATTCGGCATTCGACGAAATCAATTGAGAGAGAGATCAACTCAGTGAATGACAATCCATTGATTGATGTTTCGAGGAATAAAGCTCTACATGGAGGGAATTTTCAAGGAACTCCGATTGGGGTGTCCATGGATAATACTAGATTGGCGCTTGCCTCCATTGGAAAGCTTTTGTTTGCTCAATTCTCTGAACTTGTGAATGATTTCTATAACAATGGATTGCCTTCAAACCTCTCCGGAGGAAGTAATCCAAGCTTGGATTATGGATTTAAAGGGGCTGAAATTGCCATGGCTTCTTATTGTTCAGAACTACAATACCTGGCGAACCCGGTCACCAATCACGTTCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCATTGGGTTTAATCTCTTCCAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTGATGAGCACAACTTTCCTAGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATAGAGGAGAATCTGAGGAGCACTGTGAAGAACACAGTGAGTCAAGTGGCCAAGAAGGTTTTAACTATTGGAGTTAATGGGGAGCTTCATCCTTCAAGATTCTGTGAGAAAGATTTGCTGAAAGTCATTGATAGAGAATATGTTTTTGCTTACATTGACGATCCTTGCAGCATGACATATCCTTTAATGCAGAAGCTAAGGCAAGTTCTTGTGGAACATGCATTGAACAACAATGACGATTTGAAGAATTCAAACTCCTCAATCTTTCTAAAGATTGGAGCTTTTGAAGAGGAACTAAAAACCCTTTTGCCCAAAGAAGTAGAAAGTGGAAGACAAGCCATTGCGAAAGGCAAACCAACAATTCCCAACAAGATCAAAAATTGCAGATCATACCCACTTTACAGATTTGTTAGAGAAGAATTGGGAACTGGTATCTTGACAGGTGAAAAAGTGAAATCTCCTGGTGAAGAATTTGACAAAGTTTTTACTGCAATTTGTGAGGGGAAAATCATTGATCCTTTGCTTGAATGTCTTGAGAGTTGGAATGGGACTCCTCTTCCTATAAATTAA 2142 44.63 MKPNTCSTNGHVSAVDGLCLNDPLYWGTAAEGLKGSHLDEVKKMVGEYRRGVVRLGGESLTIGQVAAVALHDGGVKVELNEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGFLTGRPNAKAIGPTGNLLDVGAAFKLAGIDGGFFELQPKEGLALVNGTGVGSGLASIVLFEANILALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHLLDGSAFIKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLRSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREYVFAYIDDPCSMTYPLMQKLRQVLVEHALNNNDDLKNSNSSIFLKIGAFEEELKTLLPKEVESGRQAIAKGKPTIPNKIKNCRSYPLYRFVREELGTGILTGEKVKSPGEEFDKVFTAICEGKIIDPLLECLESWNGTPLPIN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35365136 35369417 + CcPI632755_02g022780.1 Cco02g2278 173035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2278 713 CDD PAL-HAL 58 523 IPR001106 -
Cco02g2278 713 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Cco02g2278 713 Gene3D - 14 259 IPR024083 -
Cco02g2278 713 FunFam Phenylalanine ammonia-lyase 260 558 - -
Cco02g2278 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cco02g2278 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Cco02g2278 713 PANTHER HISTIDINE AMMONIA-LYASE 18 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco02g2278 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco02g2278 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cco02g2278 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824(InterPro)
Cco02g2278 713 Gene3D - 526 647 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2278 Cco-Chr2:35365136 Cco04g1111 Cco-Chr4:26555232 0.00E+00 dispersed
Cco02g2278 Cco-Chr2:35365136 Cco04g1110 Cco-Chr4:26545980 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2278 K10775 - csv:101218156 1356.27