Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2312 ATGGAGCGAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAATGAAAATTCGATATTCAATAACTTCGATCTTGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGGAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAACCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATTTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCCCTCACCAGCTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 918 38.13 MERIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQNQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35600866 35602892 + CcPI632755_02g023120.1 Cco02g2312 173069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2312 305 Coils Coil 167 187 - -
Cco02g2312 305 SMART finulus 127 176 IPR011598 GO:0046983(InterPro)
Cco02g2312 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983(InterPro)
Cco02g2312 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 303 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco02g2312 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983(InterPro)
Cco02g2312 305 MobiDBLite consensus disorder prediction 97 125 - -
Cco02g2312 305 Gene3D - 119 197 IPR036638 GO:0046983(InterPro)
Cco02g2312 305 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983(InterPro)
Cco02g2312 305 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2312 Cco-Chr2:35600866 Cco05g2804 Cco-Chr5:35772790 7.70E-16 dispersed
Cco02g2312 Cco-Chr2:35600866 Cco06g1562 Cco-Chr6:26208841 4.50E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58854 PF00010 HLH 2.50E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2312 K26214 - csv:101213681 491.115