Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2354 ATGAACTGGAGTCCTAGCAGAATCTTGATGTTTCGTTTGGAAGTTCTTGGAAGATTGCTGGTGGGTTCAACTCAGCAAATGAGTATGGTTGAATACAACTTCAGAGGATATCTGGCGCAGCTTTTGATATCCGCATTGTACCTTAGAAATGATTCCTTGGAAATGGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTACGCATTAGATGTAGGAAAAAGGTTTTCTATAGAGGATGACATTAATCGTCTGTTTCAAGCAATTGATATCAGAACCTTACGTAAGAGGTCAAGTCAGCAACGTGAAGTTGATAAAGATGCTCTGCGGAAGAGTGCGATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCGTTGAGGGGCTTATGCATATCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCGGTGGTGGTTGAGGCCAGTGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTGGTAGAAATTTCCATCGTTTCAGAAAGAATTATGTCAACTTTTCAAAATAAGATGCCCGAATTGTCGCATAAAACTGAGGCTGATATACCAAACCAAGGAGCTGAGTCTTCTTCTTCCAAGGATACTGGGGTATTAGAAAAGGCGGGTGTGGATAGATTGATGTCAAAGGATCTTGTTGTTAATACGGCTACTGAGGTGACAAGTATAAAGCCACCTGGTGAGGTGGTAAAACTTAAATCTCCTTCCCTTACTCCTTCTGGTGAGAAGGATCCGGCTGTGAACGGTATGGCTATTTCCTCAACTGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAGAGGTACAATGGATTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTCAGGCCGAACAAATCAGCTTTCAATAATACACGCTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGTATGTCCGATGTCTGCACAGTAACGTTTGACACTGATTTGGCTACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGATAACGCACAGCTTCATGAGATTAAAGAAGAAGATAAATGTTCTTTTGTCTCTAGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTAGTAAACACAGAATCTAGTAGACCTGGTACGTCTCTCAGCTGCTGTAACAGGAACAGACCAACTATTATGCTATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTATCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTCGCAGTGGAGTTCGGCCTCACATGTCAAAAGACTTGAAATGGGAGGCTATCCACCACCTCAAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAAGAGACTTGGTCTCGGGGACATTGGGACTGTCTATCTCTCTGAGCTTTGCGATTCAAGCTGTCTTTTTGCTATGAAAGTGATGGACAAGGAGTTCTTGGCAAGTAGGAAAAAAATAATTCGGGCACAAACTGAGAGAGAGATACTACAAATGCTTGACCATCCATTTCTCCCTACATTATATGCCCATTTCGAGACAGATAAGCACTCATGCCTGGTCATGGACTACTGTCCCGGTGGAGATCTCCACGTACTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTCGCTGAAGTTCTTCTTGCACTGGAGTACTTGCACATGCTAGGAGTTGTTTATCGCGACCTGAAACCCGAAAACGTCCTGGTCCGAGAAGATGGGCACATCATGCTCACGGATTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAACCCACTAAGAGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGCTTCACTCCCAAAGTTCTATCTTCTCCATACAAATCCCGGAGAACGAAAACAGATCATCAGGCTAGTCTATTACCACAGCTTATAGTCGAACCAACTGGTGCACGGTCCAATTCGTTTGTAGGAACCCATGAATACCTCGCTCCTGAGATTGTCAAGGGCGACGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTCCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCAAACTCTCAAGTTCCCCGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACAAAGGAGCCCGAGAACCGATTAGGCTCGACAAAAGGAGCTATAGAGATTAAGCAGCATCCATTTTTCGAAGGCCTCAATTGGGCTCTAATACGTTGTGCAACACCACCCGAGCTTCCCAAGTTTTTCGACGGTGGAACTAGTGCAATGCCAGTGGATTCTGGGGAGAATACAAAGCGTAGAGATTTCGAAAATATGGAAGCGGATGCAGCAATGTTTGACCTGTTTTAG 2700 43.96 MNWSPSRILMFRLEVLGRLLVGSTQQMSMVEYNFRGYLAQLLISALYLRNDSLEMEEFDSEKAGTSYALDVGKRFSIEDDINRLFQAIDIRTLRKRSSQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVGSPRISEAGTIKRLYRAVVVEASGSGVPVNESKANLVEISIVSERIMSTFQNKMPELSHKTEADIPNQGAESSSSKDTGVLEKAGVDRLMSKDLVVNTATEVTSIKPPGEVVKLKSPSLTPSGEKDPAVNGMAISSTEDLTKNSVPEKERGTMDCLSSLSSSGSVVRPNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSMSDVCTVTFDTDLATIAEKSENQMPDNAQLHEIKEEDKCSFVSSNITLGVEVSGNVVNTESSRPGTSLSCCNRNRPTIMLSDERSRSREKGMLSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHHLKDQHKCLGLRNFKLLKRLGLGDIGTVYLSELCDSSCLFAMKVMDKEFLASRKKIIRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVEPTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSSPYKSRRTKTDHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCATPPELPKFFDGGTSAMPVDSGENTKRRDFENMEADAAMFDLF 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35959367 35962626 - CcPI632755_02g023540.1 Cco02g2354 173111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2354 899 FunFam serine/threonine-protein kinase D6PK-like 598 665 - -
Cco02g2354 899 MobiDBLite consensus disorder prediction 454 486 - -
Cco02g2354 899 Gene3D Transferase(Phosphotransferase) domain 1 741 863 - -
Cco02g2354 899 SUPERFAMILY Protein kinase-like (PK-like) 489 865 IPR011009 -
Cco02g2354 899 PANTHER FLIPPASE KINASE 1-RELATED 385 870 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g2354 899 Gene3D Transferase(Phosphotransferase) domain 1 594 662 - -
Cco02g2354 899 MobiDBLite consensus disorder prediction 444 487 - -
Cco02g2354 899 SMART serkin_6 514 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2354 899 FunFam Serine/threonine-protein kinase D6PK-like 512 597 - -
Cco02g2354 899 FunFam serine/threonine-protein kinase D6PK-like 741 864 - -
Cco02g2354 899 Pfam Protein kinase domain 515 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2354 899 Pfam Protein kinase domain 743 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2354 899 ProSiteProfiles Protein kinase domain profile. 514 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2354 899 CDD STKc_phototropin_like 514 864 - -
Cco02g2354 899 Gene3D Phosphorylase Kinase; domain 1 512 593 - -
Cco02g2354 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2217 Cco-Chr2:34759185 Cco02g2354 Cco-Chr2:35959367 8.30E-99 dispersed
Cco02g2354 Cco-Chr2:35959367 Cco05g0014 Cco-Chr5:133185 7.80E-149 dispersed
Cco02g2354 Cco-Chr2:35959367 Cco02g2356 Cco-Chr2:35975743 2.10E-114 proximal
Cco02g2490 Cco-Chr2:37248961 Cco02g2354 Cco-Chr2:35959367 5.50E-65 transposed
Cco07g1136 Cco-Chr7:25050990 Cco02g2354 Cco-Chr2:35959367 3.90E-91 transposed
Cco02g2354 Cco-Chr2:35959367 Cco04g1196 Cco-Chr4:27412527 2.90E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86611 PF00069 Pkinase 1.30E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2354 - - - 0.0