Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2354 | ATGAACTGGAGTCCTAGCAGAATCTTGATGTTTCGTTTGGAAGTTCTTGGAAGATTGCTGGTGGGTTCAACTCAGCAAATGAGTATGGTTGAATACAACTTCAGAGGATATCTGGCGCAGCTTTTGATATCCGCATTGTACCTTAGAAATGATTCCTTGGAAATGGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTACGCATTAGATGTAGGAAAAAGGTTTTCTATAGAGGATGACATTAATCGTCTGTTTCAAGCAATTGATATCAGAACCTTACGTAAGAGGTCAAGTCAGCAACGTGAAGTTGATAAAGATGCTCTGCGGAAGAGTGCGATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCGTTGAGGGGCTTATGCATATCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCGGTGGTGGTTGAGGCCAGTGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTGGTAGAAATTTCCATCGTTTCAGAAAGAATTATGTCAACTTTTCAAAATAAGATGCCCGAATTGTCGCATAAAACTGAGGCTGATATACCAAACCAAGGAGCTGAGTCTTCTTCTTCCAAGGATACTGGGGTATTAGAAAAGGCGGGTGTGGATAGATTGATGTCAAAGGATCTTGTTGTTAATACGGCTACTGAGGTGACAAGTATAAAGCCACCTGGTGAGGTGGTAAAACTTAAATCTCCTTCCCTTACTCCTTCTGGTGAGAAGGATCCGGCTGTGAACGGTATGGCTATTTCCTCAACTGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAGAGGTACAATGGATTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTCAGGCCGAACAAATCAGCTTTCAATAATACACGCTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGTATGTCCGATGTCTGCACAGTAACGTTTGACACTGATTTGGCTACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGATAACGCACAGCTTCATGAGATTAAAGAAGAAGATAAATGTTCTTTTGTCTCTAGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTAGTAAACACAGAATCTAGTAGACCTGGTACGTCTCTCAGCTGCTGTAACAGGAACAGACCAACTATTATGCTATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTATCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTCGCAGTGGAGTTCGGCCTCACATGTCAAAAGACTTGAAATGGGAGGCTATCCACCACCTCAAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAAGAGACTTGGTCTCGGGGACATTGGGACTGTCTATCTCTCTGAGCTTTGCGATTCAAGCTGTCTTTTTGCTATGAAAGTGATGGACAAGGAGTTCTTGGCAAGTAGGAAAAAAATAATTCGGGCACAAACTGAGAGAGAGATACTACAAATGCTTGACCATCCATTTCTCCCTACATTATATGCCCATTTCGAGACAGATAAGCACTCATGCCTGGTCATGGACTACTGTCCCGGTGGAGATCTCCACGTACTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTCGCTGAAGTTCTTCTTGCACTGGAGTACTTGCACATGCTAGGAGTTGTTTATCGCGACCTGAAACCCGAAAACGTCCTGGTCCGAGAAGATGGGCACATCATGCTCACGGATTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAACCCACTAAGAGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGCTTCACTCCCAAAGTTCTATCTTCTCCATACAAATCCCGGAGAACGAAAACAGATCATCAGGCTAGTCTATTACCACAGCTTATAGTCGAACCAACTGGTGCACGGTCCAATTCGTTTGTAGGAACCCATGAATACCTCGCTCCTGAGATTGTCAAGGGCGACGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTCCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCAAACTCTCAAGTTCCCCGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACAAAGGAGCCCGAGAACCGATTAGGCTCGACAAAAGGAGCTATAGAGATTAAGCAGCATCCATTTTTCGAAGGCCTCAATTGGGCTCTAATACGTTGTGCAACACCACCCGAGCTTCCCAAGTTTTTCGACGGTGGAACTAGTGCAATGCCAGTGGATTCTGGGGAGAATACAAAGCGTAGAGATTTCGAAAATATGGAAGCGGATGCAGCAATGTTTGACCTGTTTTAG | 2700 | 43.96 | MNWSPSRILMFRLEVLGRLLVGSTQQMSMVEYNFRGYLAQLLISALYLRNDSLEMEEFDSEKAGTSYALDVGKRFSIEDDINRLFQAIDIRTLRKRSSQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVGSPRISEAGTIKRLYRAVVVEASGSGVPVNESKANLVEISIVSERIMSTFQNKMPELSHKTEADIPNQGAESSSSKDTGVLEKAGVDRLMSKDLVVNTATEVTSIKPPGEVVKLKSPSLTPSGEKDPAVNGMAISSTEDLTKNSVPEKERGTMDCLSSLSSSGSVVRPNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSMSDVCTVTFDTDLATIAEKSENQMPDNAQLHEIKEEDKCSFVSSNITLGVEVSGNVVNTESSRPGTSLSCCNRNRPTIMLSDERSRSREKGMLSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHHLKDQHKCLGLRNFKLLKRLGLGDIGTVYLSELCDSSCLFAMKVMDKEFLASRKKIIRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVEPTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSSPYKSRRTKTDHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCATPPELPKFFDGGTSAMPVDSGENTKRRDFENMEADAAMFDLF | 899 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35959367 | 35962626 | - | CcPI632755_02g023540.1 | Cco02g2354 | 173111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2354 | 899 | FunFam | serine/threonine-protein kinase D6PK-like | 598 | 665 | - | - | |
Cco02g2354 | 899 | MobiDBLite | consensus disorder prediction | 454 | 486 | - | - | |
Cco02g2354 | 899 | Gene3D | Transferase(Phosphotransferase) domain 1 | 741 | 863 | - | - | |
Cco02g2354 | 899 | SUPERFAMILY | Protein kinase-like (PK-like) | 489 | 865 | IPR011009 | - | |
Cco02g2354 | 899 | PANTHER | FLIPPASE KINASE 1-RELATED | 385 | 870 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco02g2354 | 899 | Gene3D | Transferase(Phosphotransferase) domain 1 | 594 | 662 | - | - | |
Cco02g2354 | 899 | MobiDBLite | consensus disorder prediction | 444 | 487 | - | - | |
Cco02g2354 | 899 | SMART | serkin_6 | 514 | 846 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2354 | 899 | FunFam | Serine/threonine-protein kinase D6PK-like | 512 | 597 | - | - | |
Cco02g2354 | 899 | FunFam | serine/threonine-protein kinase D6PK-like | 741 | 864 | - | - | |
Cco02g2354 | 899 | Pfam | Protein kinase domain | 515 | 664 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2354 | 899 | Pfam | Protein kinase domain | 743 | 846 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2354 | 899 | ProSiteProfiles | Protein kinase domain profile. | 514 | 846 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2354 | 899 | CDD | STKc_phototropin_like | 514 | 864 | - | - | |
Cco02g2354 | 899 | Gene3D | Phosphorylase Kinase; domain 1 | 512 | 593 | - | - | |
Cco02g2354 | 899 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 635 | 647 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2217 | Cco-Chr2:34759185 | Cco02g2354 | Cco-Chr2:35959367 | 8.30E-99 | dispersed | |
Cco02g2354 | Cco-Chr2:35959367 | Cco05g0014 | Cco-Chr5:133185 | 7.80E-149 | dispersed | |
Cco02g2354 | Cco-Chr2:35959367 | Cco02g2356 | Cco-Chr2:35975743 | 2.10E-114 | proximal | |
Cco02g2490 | Cco-Chr2:37248961 | Cco02g2354 | Cco-Chr2:35959367 | 5.50E-65 | transposed | |
Cco07g1136 | Cco-Chr7:25050990 | Cco02g2354 | Cco-Chr2:35959367 | 3.90E-91 | transposed | |
Cco02g2354 | Cco-Chr2:35959367 | Cco04g1196 | Cco-Chr4:27412527 | 2.90E-196 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86611 | PF00069 | Pkinase | 1.30E-36 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2354 | - | - | - | 0.0 |