Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2356 ATGTCTACTGAACTCGGTCCAACATGGCACCCAAATTTTAGGCAAATCGAGCCCTTCCAAAATGGGCCCCAACTGGGCCCAATTAGCCCCCATGACCCGGCCCAATATTTCCTCCTTCAAAAATCACTCCCTTGCCCCTGCCTCGGCTCCTCAAACGCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCTCCGATGGAGTCATCTCCCGACGACATCGCCGACGACCTACAAAGCCTCAGCTTCAACTCTACCAACACCAACCGCAGCACAAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCCTCCTTTAACATCCCTTCCATTCTCAGCAAGCCCCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTCTCGTCAACTCGTCTTCTCCGACCTTAAGTTCTTCCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCTCCGGCCTCAAGTCCGCTGGAACCGACGGATGTTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTAGCGAGTAGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGAGAGATTTTGGAGTCTTTGGACCATCCGTTTCTACCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGCGACCTCCACGTTCTCCGGCAACGGCAACCTAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCGACGGCGACCCCACAGGTTATCAATGCTAAAAATCTGACAAACGGCACCGCCCCGCTAAAGGACTACCAAATTGATGCCCCTCCTTTCACATCATCCTCCTGCATTCTTCCAAACTGTATAGTCCCGGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCTGGTCACCGTAACGGACCCGAGTTTGTCGCTGAACCGGTTGACGTCCGGTCAATGTCATTTGTTGGCACCCACGAGTACTTGGCCCCGGAGATCGTCTCTGGTGAGGGCCATGGAAGCGCGGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCTAGAGCTCTTGAGTTCCCTAAAGAACCAGCGGTGCCAACGGCAGCGAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGGCGAGACGGTTGGGATCGACGACAGGGTCGTCGGCAATCAAGCACCATTCATTTTTTCAAGGAGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTTAGTAGAGAAAAAATTGCATCGGATGAAAGCTGCACAGAGGCTCCAAAGCCACCTCTTTCCTGTGCTTCCCATGGTACACTGTCATACGTTCCCTGCCTTGGTGTCATCAGAGATGTACGGAAGGCATACATACATCTGATCAAGTTGAGGGCTTGCCACGGCAAACCTCTCATTTTCGTGTCTAGAAGCAAGCAAGAGTTGGCTATTTTGCTAAAAGCCTTCTCCACCCAAATTCTTAGCCAACTTCACAAACAGCAGACGTATCATCAAATTGAAATGAAGAGCAAAAAACAAGCTTGGACAGATCTGCATGCAGACTGA 1818 51.21 MSTELGPTWHPNFRQIEPFQNGPQLGPISPHDPAQYFLLQKSLPCPCLGSSNAFPSSSSSSSSSLSPMESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFNIPSILSKPHAPSSDPCWSAVNRIRSESSSRQLVFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKNLTNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPKPPLSCASHGTLSYVPCLGVIRDVRKAYIHLIKLRACHGKPLIFVSRSKQELAILLKAFSTQILSQLHKQQTYHQIEMKSKKQAWTDLHAD 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35975743 35981330 + CcPI632755_02g023560.1 Cco02g2356 173113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2356 605 MobiDBLite consensus disorder prediction 1 19 - -
Cco02g2356 605 MobiDBLite consensus disorder prediction 56 101 - -
Cco02g2356 605 SUPERFAMILY Protein kinase-like (PK-like) 124 506 IPR011009 -
Cco02g2356 605 Pfam Protein kinase domain 149 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2356 605 Pfam Protein kinase domain 376 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2356 605 SMART serkin_6 146 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2356 605 FunFam serine/threonine-protein kinase D6PKL2 145 232 - -
Cco02g2356 605 PANTHER FLIPPASE KINASE 1-RELATED 76 501 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g2356 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2356 605 Gene3D Phosphorylase Kinase; domain 1 145 232 - -
Cco02g2356 605 FunFam serine/threonine-protein kinase D6PK-like 374 497 - -
Cco02g2356 605 ProSiteProfiles Protein kinase domain profile. 146 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2356 605 Gene3D Transferase(Phosphotransferase) domain 1 375 497 - -
Cco02g2356 605 Gene3D Transferase(Phosphotransferase) domain 1 233 307 - -
Cco02g2356 605 FunFam serine/threonine-protein kinase D6PK-like 233 300 - -
Cco02g2356 605 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2356 Cco-Chr2:35975743 Cco04g1902 Cco-Chr4:33532347 1.40E-114 dispersed
Cco02g2354 Cco-Chr2:35959367 Cco02g2356 Cco-Chr2:35975743 2.10E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86612 PF00069 Pkinase 5.70E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2356 K08286 - csv:101207262 869.766