Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2356 | ATGTCTACTGAACTCGGTCCAACATGGCACCCAAATTTTAGGCAAATCGAGCCCTTCCAAAATGGGCCCCAACTGGGCCCAATTAGCCCCCATGACCCGGCCCAATATTTCCTCCTTCAAAAATCACTCCCTTGCCCCTGCCTCGGCTCCTCAAACGCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCTCCGATGGAGTCATCTCCCGACGACATCGCCGACGACCTACAAAGCCTCAGCTTCAACTCTACCAACACCAACCGCAGCACAAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCCTCCTTTAACATCCCTTCCATTCTCAGCAAGCCCCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTCTCGTCAACTCGTCTTCTCCGACCTTAAGTTCTTCCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCTCCGGCCTCAAGTCCGCTGGAACCGACGGATGTTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTAGCGAGTAGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGAGAGATTTTGGAGTCTTTGGACCATCCGTTTCTACCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGCGACCTCCACGTTCTCCGGCAACGGCAACCTAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCGACGGCGACCCCACAGGTTATCAATGCTAAAAATCTGACAAACGGCACCGCCCCGCTAAAGGACTACCAAATTGATGCCCCTCCTTTCACATCATCCTCCTGCATTCTTCCAAACTGTATAGTCCCGGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCTGGTCACCGTAACGGACCCGAGTTTGTCGCTGAACCGGTTGACGTCCGGTCAATGTCATTTGTTGGCACCCACGAGTACTTGGCCCCGGAGATCGTCTCTGGTGAGGGCCATGGAAGCGCGGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCTAGAGCTCTTGAGTTCCCTAAAGAACCAGCGGTGCCAACGGCAGCGAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGGCGAGACGGTTGGGATCGACGACAGGGTCGTCGGCAATCAAGCACCATTCATTTTTTCAAGGAGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTTAGTAGAGAAAAAATTGCATCGGATGAAAGCTGCACAGAGGCTCCAAAGCCACCTCTTTCCTGTGCTTCCCATGGTACACTGTCATACGTTCCCTGCCTTGGTGTCATCAGAGATGTACGGAAGGCATACATACATCTGATCAAGTTGAGGGCTTGCCACGGCAAACCTCTCATTTTCGTGTCTAGAAGCAAGCAAGAGTTGGCTATTTTGCTAAAAGCCTTCTCCACCCAAATTCTTAGCCAACTTCACAAACAGCAGACGTATCATCAAATTGAAATGAAGAGCAAAAAACAAGCTTGGACAGATCTGCATGCAGACTGA | 1818 | 51.21 | MSTELGPTWHPNFRQIEPFQNGPQLGPISPHDPAQYFLLQKSLPCPCLGSSNAFPSSSSSSSSSLSPMESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFNIPSILSKPHAPSSDPCWSAVNRIRSESSSRQLVFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKNLTNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPKPPLSCASHGTLSYVPCLGVIRDVRKAYIHLIKLRACHGKPLIFVSRSKQELAILLKAFSTQILSQLHKQQTYHQIEMKSKKQAWTDLHAD | 605 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35975743 | 35981330 | + | CcPI632755_02g023560.1 | Cco02g2356 | 173113 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2356 | 605 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco02g2356 | 605 | MobiDBLite | consensus disorder prediction | 56 | 101 | - | - | |
Cco02g2356 | 605 | SUPERFAMILY | Protein kinase-like (PK-like) | 124 | 506 | IPR011009 | - | |
Cco02g2356 | 605 | Pfam | Protein kinase domain | 149 | 304 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2356 | 605 | Pfam | Protein kinase domain | 376 | 479 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2356 | 605 | SMART | serkin_6 | 146 | 479 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2356 | 605 | FunFam | serine/threonine-protein kinase D6PKL2 | 145 | 232 | - | - | |
Cco02g2356 | 605 | PANTHER | FLIPPASE KINASE 1-RELATED | 76 | 501 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco02g2356 | 605 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 270 | 282 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g2356 | 605 | Gene3D | Phosphorylase Kinase; domain 1 | 145 | 232 | - | - | |
Cco02g2356 | 605 | FunFam | serine/threonine-protein kinase D6PK-like | 374 | 497 | - | - | |
Cco02g2356 | 605 | ProSiteProfiles | Protein kinase domain profile. | 146 | 479 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2356 | 605 | Gene3D | Transferase(Phosphotransferase) domain 1 | 375 | 497 | - | - | |
Cco02g2356 | 605 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 307 | - | - | |
Cco02g2356 | 605 | FunFam | serine/threonine-protein kinase D6PK-like | 233 | 300 | - | - | |
Cco02g2356 | 605 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2356 | Cco-Chr2:35975743 | Cco04g1902 | Cco-Chr4:33532347 | 1.40E-114 | dispersed | |
Cco02g2354 | Cco-Chr2:35959367 | Cco02g2356 | Cco-Chr2:35975743 | 2.10E-114 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86612 | PF00069 | Pkinase | 5.70E-34 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2356 | K08286 | - | csv:101207262 | 869.766 |