Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2358 ATGAGCGGCGAAAGCCGACGGCGAGGCCGTGCAGACAAGAGTAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCAGCTGAGGAGGAGATCGAATCAAAGCTTGGATTTGATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGCTGCTCACTTTCGCTCCTTCATCTTTGGAGGATCAGGATACAGGAAAGGTTAATAGTTGTATTGATCTTTATTTTGTGACACAGGATGGAAGCAGCTTCAAGTCAAAATATAAGTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAATTGATGTGGAGGCGTATTTGAGACGACGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATCTGTCAGGATTGCGCAAGGCATATTTGAAACTATCATTTGAAACTGTTCAAGAATTGATGAATGTGAAGAGTGAACTACTGCATGTTGTTGAAAGCAACTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGTAAAAGGGAACAAAAGCCTCAAGATTTTCTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCGTACCATGTTCGCTTTGCTATTGATCATGATTTACGCTGTGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATTGAAACCACAAAGCTACCATTGAAATTCCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACACCAAAACCAGAATATGAAGGGTCCTTTAAAGTGACCAATGTGAAAAATGAGCTAGAGCTTCTCAAACTGTGGTTTTCCCATATGCGAGAGGTCAAACCTGGTATCTATGTCACCTACAATGGTGATTTTTTTGACTGGCCATTCATTGAAAGTAGAGCAGCCTATCATGGCATTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAGGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCGTTCATTTTTTCTCTAGCAACTATTATTCCAATGTCACCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCTAATGTTGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTACAGCAACCGGCTTCTTGAAAGTGAGACATACATTGGTGGTCACGTAGAATGCCTAGAGAGTGGTGTATTTAGATCCGATCTTCCTACCAGTTTTAGGCTTGATCCATCTGCTTATGATCAATTGATATACAATTTGGATAGAGATCTGCAATATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTCAGTGTCAAATTATACCGATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGACGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCGATGTATCCTAATATTATTTTAACAAATAGACTTCAGCCGTCATCAATAGTTACGGACGAGGTTTGTACTGCTTGTGATTTCAATCGTCCTGGGAAAACTTGCCTACGAAAACTTGAATGGGTTTGGCGAGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCTGAGTTTGTTGATAGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCCTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGCGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACAGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCGCTGGAGTTAGACACCGATGGTATTTGGTGTGCTCTACCTGGATCGTTCCCAGAGAACTTTACCTTCAAAACAAGAGATTCGAAGAAGTTGACAATTTCATATCCATGCGTTATGCTTAATGTTGATGTGGCAAGGAACAACACGAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAACATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATATAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGCATTTTGATCAAAAAGAGATATGCTGTCTTCAATGATGATGGAACACTTGCTGAGCTAAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCAGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGATGGCTAGATCTTCTGGATAATCAAGGAAAAGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAATCAAGTACCATGAGCAAGTCTTTGGTAGACTATGGGGAGCAAAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGCCAATATATAGTTGCGTGTGAACCTAAGGGTACTCCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGTAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGCATAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAAAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGTTAAATATTCAAAGAAGAATAGTGATGTTAGCTGCAGCAAACATGCTATGAATGAAGATAATTCTGAAGATTTAGAAGATTTTCAGAAGAAAACAAGTTCTACATATGGCCCCAAACCAGTTATCCGATGTTATGATGTCAGAGGCATGAAACATTCACTTATGAGCGGTAGTGAAATGAATTCCAAGATGCATGAAAATTTTAATGATGGAGGTGAGCCTTCTTCATCCTTGCATATTGAAAACATAGACAAAAATGTAGATTACAGTGGATGGCTTGAAATGAAGAAGCGGAAATGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTGAGTTTAAGGACTCCACTTGCTGCTAATAATGTTACACGGGAGTTAAATGGTGCTATGAACAATAAAGAGTCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTTTAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTCTGCTAAAGATCCCTATTAATGTTCCTAGAGTTTTTTACCTTAATTCTAAAGTACCTATTACAGATGAATTTGTGGGGAGGCGTGTTAATAAAATTCTTCCCCATGGAAGGCAGAGTTATAACCTGTATGAGGTTGTGACTGATGAGGGTCAATATAGGACACAGAGGAATAAACTTGCAGCCCTACTTGCAGATCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCTTTCAGATTGGCTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAACATTCAAGACGGATGGAGTCTGGACGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGTCAATCTCTTTCTTCTATGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACCTTTTTTCCCTCCACAAGATCAATATCTGTGGTGGTGGTTAATCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATATCGTGAAGCTTGTCAAATGCTGTCTGGTGAATCACAACCTCCTAAGAGTGGTATAACTTACAAGGTTGACTATGTTGTTAATGTCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCATAAACCATGGACCTATTCTAGCTGTAATTCAATGCCCAAACGTACTACGGCTAAAGTCAGATGTGAGAGTATTAGATGATTTTCCATGCGTGACCATTCCTTCTAATGCCCGTGATAACCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAAAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCATTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATAGAAGATGTGTGTTTCGCTGATGAGGTCCAACAACCTATTCTGACATATCCTGGAGCATATAGAAAAGTTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTCAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAACTTTCTAATGAAGAAGGTGGCTTCGATGAGGCTGCTTCGTGTGCTCCGGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGGAATTTTGCGGCATCTGTACAGATGGATTTGCAGCCCCCAGTCAAAACTTCACGATCCAGCTCTTCATCGTTTGCTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGCAAATTAGGCGCCATCATTATATTTGCAAACTTCTCAAGAATTATTATATACACGGGAAGGTTTGATCTCTCTTCTGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACAAG 5600 40.04 MSGESRRRGRADKSSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFAPSSLEDQDTGKVNSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMEIDVEAYLRRRYEGRIADIEILEKEDLDLKNHLSGLRKAYLKLSFETVQELMNVKSELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGSFKVTNVKNELELLKLWFSHMREVKPGIYVTYNGDFFDWPFIESRAAYHGIKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAREKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFYSNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLIYNLDRDLQYAIQVEGKMDLESVSNYTDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDSGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTRDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKTYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRISSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRVKYSKKNSDVSCSKHAMNEDNSEDLEDFQKKTSSTYGPKPVIRCYDVRGMKHSLMSGSEMNSKMHENFNDGGEPSSSLHIENIDKNVDYSGWLEMKKRKWKDTLDKRKKQRLVSLRTPLAANNVTRELNGAMNNKESPRTGVGSYFKRHEGSLTRCHWQILQLVHSSQSGQYFAWAVVEGVLLKIPINVPRVFYLNSKVPITDEFVGRRVNKILPHGRQSYNLYEVVTDEGQYRTQRNKLAALLADPEVEGIYESKVPLEFKSIFQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKSISFFYVYHSISEGRAIYITFFPSTRSISVVVVNPYQNKDLSSTFLERQYREACQMLSGESQPPKSGITYKVDYVVNVKEAEVILQRSITEHRSINHGPILAVIQCPNVLRLKSDVRVLDDFPCVTIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGSLFGFERDMQCGAQLSNEEGGFDEAASCAPAFRVLKQLIQRCLADAVTSGNVYADGILRHLYRWICSPQSKLHDPALHRLLHKVMQKVFALLLAELRKLGAIIIFANFSRIIIYTGRFDLSSAKAYCDSLLKTVQT 1866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35984404 36009919 + CcPI632755_02g023580.1 Cco02g2358 173115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2358 1866 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 946 1121 - -
Cco02g2358 1866 Pfam Domain of unknown function (DUF1744) 1522 1865 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cco02g2358 1866 SUPERFAMILY Ribonuclease H-like 60 468 IPR012337 -
Cco02g2358 1866 SMART polmehr3 240 843 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cco02g2358 1866 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Cco02g2358 1866 CDD POLBc_epsilon 504 1122 - -
Cco02g2358 1866 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
Cco02g2358 1866 MobiDBLite consensus disorder prediction 1173 1195 - -
Cco02g2358 1866 FunFam DNA polymerase epsilon catalytic subunit 241 469 - -
Cco02g2358 1866 FunFam DNA polymerase epsilon catalytic subunit 724 799 - -
Cco02g2358 1866 Gene3D - 941 1125 IPR042087 -
Cco02g2358 1866 CDD DNA_polB_epsilon_exo 241 445 - -
Cco02g2358 1866 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Cco02g2358 1866 SMART DUF1744_2 1510 1865 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cco02g2358 1866 FunFam DNA polymerase epsilon catalytic subunit 757 937 - -
Cco02g2358 1866 Pfam DNA polymerase family B, exonuclease domain 195 401 IPR006133 -
Cco02g2358 1866 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 6 1866 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0045004(PANTHER)
Cco02g2358 1866 MobiDBLite consensus disorder prediction 1 23 - -
Cco02g2358 1866 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Cco02g2358 1866 MobiDBLite consensus disorder prediction 1173 1191 - -
Cco02g2358 1866 Gene3D - 239 469 IPR036397 GO:0003676(InterPro)
Cco02g2358 1866 FunFam DNA polymerase epsilon catalytic subunit 57 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2358 Cco-Chr2:35984404 Cco09g2253 Cco-Chr9:36798943 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2358 K02324 - csv:101208568 3615.85