Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2371 ATGAACAACAACAACAACAATGGTTTAAAGAAGGATTTTTTTTTAATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCATATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCAGGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGACCCAAGAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCATACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAATTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACATCTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGGGCCGGCGGTACTGGCGGCGGCATTGTCAGCCTCGCTAGTGCAATTTTCGATATGGAATATGTAAGGTGGTTGGAAGAGGAACATCGACATACAGTGGAGCTGCGTGGGGGACTAGAGGCACATCTGCCTGACGTGGATTTGAGAGTAAGAGTAGATGCATGCATTTGCCATTACAACGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACCGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCGTCCGATCTCATCAAGATGTTAATGTCACAACTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCGTCGCCGGCGGTCCAATCATCGATGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTGAGACAACAAATACTTCATCGACTACGTAGGATACTCACGGTTCGACAAGCAGCTAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGTAA 1497 43.09 MNNNNNNGLKKDFFLMGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINQDGQSFDFGELEQAIVLQGLGPKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTHTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSLASAIFDMEYVRWLEEEHRHTVELRGGLEAHLPDVDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIVAGGPIIDGINHMVLAMDKLSSLQGFLHQADILRQQILHRLRRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36105989 36112930 + CcPI632755_02g023710.1 Cco02g2371 173128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2371 498 PANTHER TRANSCRIPTION FACTOR TGA9 159 498 - -
Cco02g2371 498 MobiDBLite consensus disorder prediction 160 174 - -
Cco02g2371 498 Coils Coil 242 269 - -
Cco02g2371 498 SUPERFAMILY Leucine zipper domain 223 266 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2371 498 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2371 498 Gene3D - 222 271 - -
Cco02g2371 498 Pfam Seed dormancy control 306 380 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco02g2371 498 Pfam bZIP transcription factor 222 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2371 498 MobiDBLite consensus disorder prediction 109 174 - -
Cco02g2371 498 MobiDBLite consensus disorder prediction 144 159 - -
Cco02g2371 498 MobiDBLite consensus disorder prediction 128 143 - -
Cco02g2371 498 FunFam BZIP family transcription factor 222 271 - -
Cco02g2371 498 ProSiteProfiles DOG1 domain profile. 287 495 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco02g2371 498 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 265 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2371 498 SMART brlzneu 218 296 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2371 498 Coils Coil 136 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1350 Cco-Chr1:22410535 Cco02g2371 Cco-Chr2:36105989 1.50E-138 dispersed
Cco02g2371 Cco-Chr2:36105989 Cco10g1716 Cco-Chr10:30698412 5.90E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58859 PF14144 DOG1 1.60E-27 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2371 K14431 - csv:101223216 613.609