Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2377 ATGGCGGAAGAACGTAGATGCCAAGCGCCGAAACTTTGCGTTAATAACTGTGGATTCTTCGGGAGTCCGGCGACTCAAGATCTCTGTTCAAAATGTTACCGAGATCTGCAGTTGAAGGAACAACAATCCTCCTCCGCTAAACTCGCCTTAAACCAAACCCTAACGTCCGCCGCGTCATCGTCCTTCGCGGATGCGGCGTTGTTAAATCCGAAACCGGCTTCATCGGAAGCGAACCAACCTCTGGCGGAGACGAGGACGGAAGTGGTTCCGACGCCGGCGGCAACACAGCAGCAGCCGAGCCGATGTACGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGTTGCGAATTTGACTTCAAGCGGATGGGGAAGGAGCAGATCGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATCTGA 486 56.58 MAEERRCQAPKLCVNNCGFFGSPATQDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAASSSFADAALLNPKPASSEANQPLAETRTEVVPTPAATQQQPSRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKRMGKEQIAKANPVVKGEKLQKI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36158432 36158917 - CcPI632755_02g023770.1 Cco02g2377 173134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2377 161 Pfam AN1-like Zinc finger 102 138 IPR000058 GO:0008270(InterPro)
Cco02g2377 161 FunFam Zinc finger AN1-type containing 6 74 157 - -
Cco02g2377 161 SUPERFAMILY AN1-like Zinc finger 88 156 IPR035896 -
Cco02g2377 161 Gene3D - 73 157 IPR035896 -
Cco02g2377 161 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270(InterPro)
Cco02g2377 161 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cco02g2377 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Cco02g2377 161 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cco02g2377 161 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cco02g2377 161 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 161 IPR050652 -
Cco02g2377 161 MobiDBLite consensus disorder prediction 72 93 - -
Cco02g2377 161 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270(InterPro)
Cco02g2377 161 MobiDBLite consensus disorder prediction 69 93 - -
Cco02g2377 161 Gene3D - 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2377 Cco-Chr2:36158432 Cco04g1209 Cco-Chr4:27513435 5.80E-39 dispersed
Cco02g2377 Cco-Chr2:36158432 Cco03g1373 Cco-Chr3:27477162 1.20E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2377 - - - 0.0